RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 IRX3P78415 501 aaPredicted RBP16.5■□□□□ 0.23
CHD3-209ENST00000473376 TTC6Q86TZ1 520 aa16.5■□□□□ 0.23
CHD3-209ENST00000473376 CCDC84Q86UT8 332 aaPredicted RBP16.5■□□□□ 0.23
CHD3-209ENST00000473376 MAPKAPK5Q8IW41 473 aa16.5■□□□□ 0.23
CHD3-209ENST00000473376 RPAP2Q8IXW5 612 aaPredicted RBP16.5■□□□□ 0.23
CHD3-209ENST00000473376 TRMT44Q8IYL2 757 aaKnown RBP16.5■□□□□ 0.23
CHD3-209ENST00000473376 C12orf42Q96LP6 360 aa16.5■□□□□ 0.23
CHD3-209ENST00000473376 UNC93B1Q9H1C4 597 aa16.5■□□□□ 0.23
CHD3-209ENST00000473376 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.5■□□□□ 0.23
CHD3-209ENST00000473376 PALD1Q9ULE6 856 aa16.5■□□□□ 0.23
CHD3-209ENST00000473376 H0YGN5 161 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 FARP2O94887 1054 aaPredicted RBP16.49■□□□□ 0.23
CHD3-209ENST00000473376 HMGCRP04035 888 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 MTMR2Q13614 643 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 MIER1Q8N108 512 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 GPRC5AQ8NFJ5 357 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 SOCS4Q8WXH5 440 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 DPF3Q92784 378 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 CCDC8Q9H0W5 538 aaPredicted RBP16.49■□□□□ 0.23
CHD3-209ENST00000473376 C1orf115Q9H7X2 142 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 SERPINB13Q9UIV8 391 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 ZBTB21Q9ULJ3 1066 aa16.49■□□□□ 0.23
CHD3-209ENST00000473376 IDH1O75874 414 aaKnown RBP16.48■□□□□ 0.23
CHD3-209ENST00000473376 MAPK4P31152 587 aa16.48■□□□□ 0.23
CHD3-209ENST00000473376 FXR1P51114 621 aaKnown RBP eCLIP16.48■□□□□ 0.23
CHD3-209ENST00000473376 USP17L2Q6R6M4 530 aa16.48■□□□□ 0.23
CHD3-209ENST00000473376 TLR7Q9NYK1 1049 aaKnown RBP16.48■□□□□ 0.23
CHD3-209ENST00000473376 COLQQ9Y215 455 aaPredicted RBP16.48■□□□□ 0.23
CHD3-209ENST00000473376 RPTORQ8N122 1335 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 FOCADQ5VW36 1801 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 A0A1W2PPC1 479 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 HMMRO75330 724 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 ECM2O94769 699 aaPredicted RBP16.47■□□□□ 0.23
CHD3-209ENST00000473376 ELNP15502 786 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 USP14P54578 494 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 HERVK_113P62684 666 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 DIEXFQ68CQ4 756 aaKnown RBP16.47■□□□□ 0.23
CHD3-209ENST00000473376 AACSQ86V21 672 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 CLASRPQ8N2M8 674 aaKnown RBP16.47■□□□□ 0.23
CHD3-209ENST00000473376 MAGEB6Q8N7X4 407 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 RHPN1Q8TCX5 695 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 KIF1BPQ96EK5 621 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 DDX19BQ9UMR2 479 aa16.47■□□□□ 0.23
CHD3-209ENST00000473376 RAB11FIP3O75154 756 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 TFRCP02786 760 aaKnown RBP16.46■□□□□ 0.23
CHD3-209ENST00000473376 USP5P45974 858 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 JAG1P78504 1218 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 LBX2Q6XYB7 198 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 DEFB118Q96PH6 123 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 P2RX7Q99572 595 aaKnown RBP16.46■□□□□ 0.23
CHD3-209ENST00000473376 KIAA1683Q9H0B3 1180 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 HMX1Q9NP08 348 aaPredicted RBP16.46■□□□□ 0.23
CHD3-209ENST00000473376 SIPA1L1O43166 1804 aa16.46■□□□□ 0.23
CHD3-209ENST00000473376 ATAD5Q96QE3 1844 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 DYNLL1P63167 89 aaKnown RBP16.45■□□□□ 0.22
CHD3-209ENST00000473376 MAP3K21Q5TCX8 1036 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 NUDT12Q9BQG2 462 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 RIOK1Q9BRS2 568 aaKnown RBP16.45■□□□□ 0.22
CHD3-209ENST00000473376 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.45■□□□□ 0.22
CHD3-209ENST00000473376 PRO3102Q9H379 93 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 EMILIN3Q9NT22 766 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 RBPJLQ9UBG7 517 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 EXOC6BQ9Y2D4 811 aa16.45■□□□□ 0.22
CHD3-209ENST00000473376 USP17L15C9J2P7 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L13C9JLJ4 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L11C9JVI0 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L18D6R9N7 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L22D6RA61 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L17D6RBQ6 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L19D6RCP7 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L20D6RJB6 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 GH2P01242 217 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP17L24Q0WX57 530 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 CERKLQ49MI3 558 aaPredicted RBP16.44■□□□□ 0.22
CHD3-209ENST00000473376 NECAB2Q7Z6G3 386 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 USP6NLQ92738 828 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 ANTXR1Q9H6X2 564 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 ZBTB40Q9NUA8 1239 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 RABGAP1Q9Y3P9 1069 aa16.44■□□□□ 0.22
CHD3-209ENST00000473376 GDF11O95390 407 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 ERVK-9P63128 1117 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 ERVK-24P63145 666 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 CCNA1P78396 465 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 GABPAQ06546 454 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 PDE3AQ14432 1141 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 MIGA1Q8NAN2 632 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 PANK1Q8TE04 598 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 CABP5Q9NP86 173 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 SAP30BPQ9UHR5 308 aaKnown RBP16.43■□□□□ 0.22
CHD3-209ENST00000473376 CEP290O15078 2479 aa16.43■□□□□ 0.22
CHD3-209ENST00000473376 CDK5RAP2Q96SN8 1893 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 MAGEB6P1A0A0J9YX57 407 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 EVI5O60447 810 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 GLRX3O76003 335 aaKnown RBP16.42■□□□□ 0.22
CHD3-209ENST00000473376 ABCB5Q2M3G0 1257 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 MORN1Q5T089 497 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 SLC9C2Q5TAH2 1124 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 CATSPERGQ6ZRH7 1159 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 CRNKL1Q9BZJ0 848 aaKnown RBP16.42■□□□□ 0.22
CHD3-209ENST00000473376 TXNRD2Q9NNW7 524 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms