RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 CCDC102BQ68D86 513 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 SAMD1Q6SPF0 538 aaPredicted RBP8.52□□□□□ -1.05
HDAC1-204ENST00000471488 TEX11Q8IYF3 940 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 NEUROD6Q96NK8 337 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 MORF4L1Q9UBU8 362 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 DDX20Q9UHI6 824 aaKnown RBP8.52□□□□□ -1.05
HDAC1-204ENST00000471488 PA2G4Q9UQ80 394 aaKnown RBP8.52□□□□□ -1.05
HDAC1-204ENST00000471488 GAKO14976 1311 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 CACNA1FO60840 1977 aa8.52□□□□□ -1.05
HDAC1-204ENST00000471488 USP17L10C9JJH3 530 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 SEMA3EO15041 775 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 BACE1P56817 501 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 MAP3K10Q02779 954 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 MAP2K5Q13163 448 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 RRP1BQ14684 758 aaKnown RBP8.51□□□□□ -1.05
HDAC1-204ENST00000471488 SHROOM1Q2M3G4 852 aaPredicted RBP8.51□□□□□ -1.05
HDAC1-204ENST00000471488 CCDC129Q6ZRS4 1044 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 TBC1D9Q6ZT07 1266 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 ATG9AQ7Z3C6 839 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 WDR63Q8IWG1 891 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 USP38Q8NB14 1042 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 TBC1D2Q9BYX2 928 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 FLRT1Q9NZU1 646 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 RBPJLQ9UBG7 517 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 SAP30BPQ9UHR5 308 aaKnown RBP8.51□□□□□ -1.05
HDAC1-204ENST00000471488 PLXNB2O15031 1838 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 SPTBN5Q9NRC6 3674 aaKnown RBP8.51□□□□□ -1.05
HDAC1-204ENST00000471488 UTYO14607 1347 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 SALL1Q9NSC2 1324 aa8.51□□□□□ -1.05
HDAC1-204ENST00000471488 LOC285556D6RIA3 1793 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 DNAH12Q6ZR08 3092 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 PRUNE2Q8WUY3 3088 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 ATAD5Q96QE3 1844 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 DNM1LO00429 736 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 TBC1D12O60347 775 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 LDHCP07864 332 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 ADCYAP1R1P41586 468 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 CCNA1P78396 465 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 GSTO1P78417 241 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 SMAD3P84022 425 aaKnown RBP8.5□□□□□ -1.05
HDAC1-204ENST00000471488 GRIN2CQ14957 1233 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 SH3D19Q5HYK7 790 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 MORN1Q5T089 497 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 SLC39A5Q6ZMH5 540 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 SH3RF1Q7Z6J0 888 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 DPP9Q86TI2 863 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 MAPKAPK5Q8IW41 473 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 ARRDC4Q8NCT1 418 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 SH3RF3Q8TEJ3 882 aaPredicted RBP8.5□□□□□ -1.05
HDAC1-204ENST00000471488 LPAR1Q92633 364 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 USP44Q9H0E7 712 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 MRS2Q9HD23 443 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 LRP2BPQ9P2M1 347 aa8.5□□□□□ -1.05
HDAC1-204ENST00000471488 RFX7Q2KHR2 1363 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 GPR75-ASB3A0A0A6YYF3 556 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 C19orf81C9J6K1 198 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 MSCO60682 206 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 PQBP1O60828 265 aaKnown RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 ASNSP08243 561 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 UBTFL1P0CB47 393 aaPredicted RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 RAG1P15918 1043 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 IGFBP4P22692 258 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 IL15P40933 162 aaPredicted RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 RFX5P48382 616 aaPredicted RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 RHBDL3P58872 404 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 RAB3GAP1Q15042 981 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 PI16Q6UXB8 463 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 MICALL1Q8N3F8 863 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 TGFBRAP1Q8WUH2 860 aa8.49□□□□□ -1.05
HDAC1-204ENST00000471488 GAS2L1Q99501 681 aaPredicted RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 AATFQ9NY61 560 aaKnown RBP eCLIP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 HERC5Q9UII4 1024 aaKnown RBP8.49□□□□□ -1.05
HDAC1-204ENST00000471488 MAST2Q6P0Q8 1798 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 TRIM43BA6NCK2 446 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 SLC15A5A6NIM6 579 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 APBB1O00213 710 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 DNAJB2P25686 324 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 HOXA7P31268 230 aaPredicted RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PLA2G5P39877 138 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 JAG1P78504 1218 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PLS1Q14651 629 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 MVPQ14764 893 aaKnown RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PRAMEF19Q5SWL8 479 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 USP17L2Q6R6M4 530 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 MRPL50Q8N5N7 158 aaKnown RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 TRPV1Q8NER1 839 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 NPLOC4Q8TAT6 608 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 ADAMTS19Q8TE59 1207 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 GTF3C2Q8WUA4 911 aaPredicted RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 USP6NLQ92738 828 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 TRIM43Q96BQ3 446 aaPredicted RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 XAGE2Q96GT9 111 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 WDR18Q9BV38 432 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PDLIM7Q9NR12 457 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PI4KBQ9UBF8 816 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 PALD1Q9ULE6 856 aa8.48□□□□□ -1.05
HDAC1-204ENST00000471488 COL2A1P02458 1487 aaPredicted RBP8.48□□□□□ -1.05
HDAC1-204ENST00000471488 FRMPD3Q5JV73 1810 aa8.47□□□□□ -1.05
HDAC1-204ENST00000471488 A0A1B0GUL7 405 aa8.47□□□□□ -1.05
HDAC1-204ENST00000471488 USP17L15C9J2P7 530 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms