RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 POLR2AP24928 1970 aaKnown RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 INPP5BP32019 993 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 KIAA1755Q5JYT7 1200 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 LDLRAD1Q5T700 205 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 DHX32Q7L7V1 743 aaKnown RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 KRT26Q7Z3Y9 468 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 ZNF784Q8NCA9 323 aaPredicted RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 KLRG1Q96E93 195 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 NOL10Q9BSC4 688 aaKnown RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 LRRC2Q9BYS8 371 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 LY9Q9HBG7 655 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 HERC5Q9UII4 1024 aaKnown RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 TAOK2Q9UL54 1235 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 HPS5Q9UPZ3 1129 aa11.73□□□□□ -0.53
SF3A1-207ENST00000471342 RBM19Q9Y4C8 960 aaKnown RBP11.73□□□□□ -0.53
SF3A1-207ENST00000471342 MYH1P12882 1939 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 WDR19Q8NEZ3 1342 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 DCAF8L1A6NGE4 600 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 MYO1BO43795 1136 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 CAP2P40123 477 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 EAPPQ56P03 285 aaPredicted RBP11.72□□□□□ -0.53
SF3A1-207ENST00000471342 CDC37L1Q7L3B6 337 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 RASGRP2Q7LDG7 609 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 CCDC84Q86UT8 332 aaPredicted RBP11.72□□□□□ -0.53
SF3A1-207ENST00000471342 ENAHQ8N8S7 591 aaPredicted RBP11.72□□□□□ -0.53
SF3A1-207ENST00000471342 LARP6Q9BRS8 491 aaKnown RBP11.72□□□□□ -0.53
SF3A1-207ENST00000471342 SWAP70Q9UH65 585 aa11.72□□□□□ -0.53
SF3A1-207ENST00000471342 CASTP20810 708 aaKnown RBP11.71□□□□□ -0.53
SF3A1-207ENST00000471342 GJA5P36382 358 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 AK2P54819 239 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 TFAP4Q01664 338 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 NOL9Q5SY16 702 aaKnown RBP11.71□□□□□ -0.53
SF3A1-207ENST00000471342 MFSD6Q6ZSS7 791 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 SGMS1Q86VZ5 419 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 NCOA7Q8NI08 942 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 MKL1Q969V6 931 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 ZKSCAN3Q9BRR0 538 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 TPCN1Q9ULQ1 816 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 SNCAIPQ9Y6H5 919 aa11.71□□□□□ -0.53
SF3A1-207ENST00000471342 PRC1O43663 620 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 GDF11O95390 407 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 FUT2Q10981 343 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 MOGSQ13724 837 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 TNFAIP1Q13829 316 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 SEPT2Q15019 361 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 POTEEQ6S8J3 1075 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 ACER1Q8TDN7 264 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 CNKSR2Q8WXI2 1034 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 SNX21Q969T3 373 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 DCPSQ96C86 337 aaKnown RBP11.7□□□□□ -0.54
SF3A1-207ENST00000471342 CEP95Q96GE4 821 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 MTA3Q9BTC8 594 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 MTMR4Q9NYA4 1195 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 TMOD2Q9NZR1 351 aa11.7□□□□□ -0.54
SF3A1-207ENST00000471342 NID2Q14112 1375 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 GH2P01242 217 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 ZKSCAN1P17029 563 aaPredicted RBP11.69□□□□□ -0.54
SF3A1-207ENST00000471342 LIFRP42702 1097 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 TNNI2P48788 182 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 TROAPQ12815 778 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 KRT32Q14532 448 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 RABEP1Q15276 862 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 ME3Q16798 604 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 RNF20Q5VTR2 975 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 Q6ZUG5 572 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 ZKSCAN4Q969J2 545 aaPredicted RBP11.69□□□□□ -0.54
SF3A1-207ENST00000471342 CLMNQ96JQ2 1002 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 TBC1D2Q9BYX2 928 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 RNF41Q9H4P4 317 aaPredicted RBP11.69□□□□□ -0.54
SF3A1-207ENST00000471342 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.69□□□□□ -0.54
SF3A1-207ENST00000471342 ZBTB21Q9ULJ3 1066 aa11.69□□□□□ -0.54
SF3A1-207ENST00000471342 TNKSO95271 1327 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 EIF5BO60841 1220 aaKnown RBP11.68□□□□□ -0.54
SF3A1-207ENST00000471342 DTNBO60941 627 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 CTDNEP1O95476 244 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 HLA-DOAP06340 250 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 SNHG28P0DPA3 235 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 ECE1P42892 770 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 NEK4P51957 841 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 DGKZQ13574 1117 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 VGLL4Q14135 290 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 CERKLQ49MI3 558 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-207ENST00000471342 BLOC1S2Q6QNY1 142 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 DGKHQ86XP1 1220 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 SULF1Q8IWU6 871 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 ZSCAN29Q8IWY8 852 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-207ENST00000471342 CCDC17Q96LX7 622 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 ZSCAN10Q96SZ4 725 aaPredicted RBP11.68□□□□□ -0.54
SF3A1-207ENST00000471342 TMEM47Q9BQJ4 181 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 KRT23Q9C075 422 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 CNNM2Q9H8M5 875 aa11.68□□□□□ -0.54
SF3A1-207ENST00000471342 RANBP6O60518 1105 aaKnown RBP11.67□□□□□ -0.54
SF3A1-207ENST00000471342 CTNND1O60716 968 aaKnown RBP11.67□□□□□ -0.54
SF3A1-207ENST00000471342 PTPRAP18433 802 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 PDIA3P30101 505 aaKnown RBP11.67□□□□□ -0.54
SF3A1-207ENST00000471342 CDC27P30260 824 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 MCM5P33992 734 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 NT5C2P49902 561 aa11.67□□□□□ -0.54
SF3A1-207ENST00000471342 PDE4BQ07343 736 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms