RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 MAGEB6Q8N7X4 407 aa21.31■■□□□ 1
COL7A1-208ENST00000470076 TMOD4Q9NZQ9 345 aa21.31■■□□□ 1
COL7A1-208ENST00000470076 SAP30BPQ9UHR5 308 aaKnown RBP21.31■■□□□ 1
COL7A1-208ENST00000470076 C19orf81C9J6K1 198 aa21.3■■□□□ 1
COL7A1-208ENST00000470076 ELNP15502 786 aa21.3■■□□□ 1
COL7A1-208ENST00000470076 MIGA1Q8NAN2 632 aa21.3■■□□□ 1
COL7A1-208ENST00000470076 UNC93B1Q9H1C4 597 aa21.3■■□□□ 1
COL7A1-208ENST00000470076 ZBTB21Q9ULJ3 1066 aa21.3■■□□□ 1
COL7A1-208ENST00000470076 USP17L10C9JJH3 530 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 GDF11O95390 407 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 INHAP05111 366 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 CAPN2P17655 700 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 HOXA7P31268 230 aaPredicted RBP21.29■■□□□ 1
COL7A1-208ENST00000470076 USP5P45974 858 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 IRX3P78415 501 aaPredicted RBP21.29■■□□□ 1
COL7A1-208ENST00000470076 JAG1P78504 1218 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 RHPN1Q8TCX5 695 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 U2AF1L4Q8WU68 220 aaKnown RBP21.29■■□□□ 1
COL7A1-208ENST00000470076 ANTXR1Q9H6X2 564 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 NDUFB9Q9Y6M9 179 aa21.29■■□□□ 1
COL7A1-208ENST00000470076 UBE2Q1Q7Z7E8 422 aa21.28■■□□□ 1
COL7A1-208ENST00000470076 RPAP2Q8IXW5 612 aaPredicted RBP21.28■■□□□ 1
COL7A1-208ENST00000470076 IL1RAPL2Q9NP60 686 aa21.28■■□□□ 1
COL7A1-208ENST00000470076 MORF4L1Q9UBU8 362 aa21.28■■□□□ 1
COL7A1-208ENST00000470076 HMMRO75330 724 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 SGPL1O95470 568 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 TTF1Q15361 905 aaPredicted RBP21.27■■□□□ 1
COL7A1-208ENST00000470076 HTATIP2Q9BUP3 242 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 EHD4Q9H223 541 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 TAOK2Q9UL54 1235 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 DDX19BQ9UMR2 479 aa21.27■■□□□ 1
COL7A1-208ENST00000470076 SHROOM1Q2M3G4 852 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-208ENST00000470076 TATDN1Q6P1N9 297 aa21.26■□□□□ 0.99
COL7A1-208ENST00000470076 TTC6Q86TZ1 520 aa21.26■□□□□ 0.99
COL7A1-208ENST00000470076 CLASRPQ8N2M8 674 aaKnown RBP21.26■□□□□ 0.99
COL7A1-208ENST00000470076 KIF1BPQ96EK5 621 aa21.26■□□□□ 0.99
COL7A1-208ENST00000470076 SERPINB13Q9UIV8 391 aa21.26■□□□□ 0.99
COL7A1-208ENST00000470076 H0YGN5 161 aa21.25■□□□□ 0.99
COL7A1-208ENST00000470076 DPF3Q92784 378 aa21.25■□□□□ 0.99
COL7A1-208ENST00000470076 P2RX7Q99572 595 aaKnown RBP21.25■□□□□ 0.99
COL7A1-208ENST00000470076 FARP2O94887 1054 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-208ENST00000470076 GH2P01242 217 aa21.24■□□□□ 0.99
COL7A1-208ENST00000470076 HERVK_113P62684 666 aa21.24■□□□□ 0.99
COL7A1-208ENST00000470076 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.24■□□□□ 0.99
COL7A1-208ENST00000470076 RIOK1Q9BRS2 568 aaKnown RBP21.24■□□□□ 0.99
COL7A1-208ENST00000470076 CHMP4BQ9H444 224 aaKnown RBP21.24■□□□□ 0.99
COL7A1-208ENST00000470076 PAK6Q9NQU5 681 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-208ENST00000470076 ZBTB40Q9NUA8 1239 aa21.24■□□□□ 0.99
COL7A1-208ENST00000470076 GJD2Q9UKL4 321 aa21.24■□□□□ 0.99
COL7A1-208ENST00000470076 HMGCRP04035 888 aa21.23■□□□□ 0.99
COL7A1-208ENST00000470076 USP17L2Q6R6M4 530 aa21.23■□□□□ 0.99
COL7A1-208ENST00000470076 GPRC5AQ8NFJ5 357 aa21.23■□□□□ 0.99
COL7A1-208ENST00000470076 GTF3C2Q8WUA4 911 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-208ENST00000470076 DEFB118Q96PH6 123 aa21.23■□□□□ 0.99
COL7A1-208ENST00000470076 COLQQ9Y215 455 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-208ENST00000470076 COG6Q9Y2V7 657 aa21.23■□□□□ 0.99
COL7A1-208ENST00000470076 TRIOBPQ9H2D6 2365 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 MAGEB6P1A0A0J9YX57 407 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 APBB1O00213 710 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 RAB11FIP3O75154 756 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 TFRCP02786 760 aaKnown RBP21.22■□□□□ 0.99
COL7A1-208ENST00000470076 IFIT2P09913 472 aaKnown RBP21.22■□□□□ 0.99
COL7A1-208ENST00000470076 SLC9C2Q5TAH2 1124 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 EMILIN3Q9NT22 766 aa21.22■□□□□ 0.99
COL7A1-208ENST00000470076 DDX60LQ5H9U9 1706 aaKnown RBP21.21■□□□□ 0.99
COL7A1-208ENST00000470076 PLXNB2O15031 1838 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 PDE6AP16499 860 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 CERKLQ49MI3 558 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-208ENST00000470076 SIRT2Q8IXJ6 389 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 C12orf42Q96LP6 360 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 FEZ1Q99689 392 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 CRNKL1Q9BZJ0 848 aaKnown RBP21.21■□□□□ 0.99
COL7A1-208ENST00000470076 CRISPLD2Q9H0B8 497 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 TXNRD2Q9NNW7 524 aa21.21■□□□□ 0.99
COL7A1-208ENST00000470076 NAV1Q8NEY1 1877 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 USP14P54578 494 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 ABCB5Q2M3G0 1257 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 SOCS4Q8WXH5 440 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 DNAJC2Q99543 621 aaKnown RBP21.2■□□□□ 0.98
COL7A1-208ENST00000470076 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.2■□□□□ 0.98
COL7A1-208ENST00000470076 CABP5Q9NP86 173 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 RBPJLQ9UBG7 517 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 NR2E3Q9Y5X4 410 aa21.2■□□□□ 0.98
COL7A1-208ENST00000470076 GOLIM4O00461 696 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 POLR3DP05423 398 aaPredicted RBP21.19■□□□□ 0.98
COL7A1-208ENST00000470076 MAPK4P31152 587 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 PLCD1P51178 756 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 ERVK-9P63128 1117 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 ERVK-24P63145 666 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 RAB3GAP1Q15042 981 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 NUDT12Q9BQG2 462 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 KIAA1683Q9H0B3 1180 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 RCAN3Q9UKA8 241 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 ZNF532Q9HCE3 1301 aa21.19■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L15C9J2P7 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L13C9JLJ4 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L11C9JVI0 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L18D6R9N7 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L22D6RA61 530 aa21.18■□□□□ 0.98
COL7A1-208ENST00000470076 USP17L17D6RBQ6 530 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms