RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 CD2APQ9Y5K6 639 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 INSRP06213 1382 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 TRAF5O00463 557 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 IVLP07476 585 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 CNNM4Q6P4Q7 775 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 IPO4Q8TEX9 1081 aaKnown RBP9.72□□□□□ -0.85
HPS4-209ENST00000466781 EPSTI1Q96J88 318 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 SPC25Q9HBM1 224 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 PRPF6O94906 941 aaKnown RBP9.72□□□□□ -0.85
HPS4-209ENST00000466781 RXRAP19793 462 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 ASIC2Q16515 512 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 RIOK1Q9BRS2 568 aaKnown RBP9.72□□□□□ -0.85
HPS4-209ENST00000466781 SRRTQ9BXP5 876 aaKnown RBP9.72□□□□□ -0.85
HPS4-209ENST00000466781 ADGRL3Q9HAR2 1447 aa9.72□□□□□ -0.85
HPS4-209ENST00000466781 VWA3AA6NCI4 1184 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 ARID4AP29374 1257 aaPredicted RBP9.71□□□□□ -0.85
HPS4-209ENST00000466781 IRX3P78415 501 aaPredicted RBP9.71□□□□□ -0.85
HPS4-209ENST00000466781 ZNF174Q15697 407 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 CEP85Q6P2H3 762 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 CERS3Q8IU89 383 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 AFG3L2Q9Y4W6 797 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 WDR17Q8IZU2 1322 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 CROCC2H7BZ55 1655 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 MROH5Q6ZUA9 1318 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 RLBP1P12271 317 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 FAM200AQ8TCP9 573 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 ZNF830Q96NB3 372 aaPredicted RBP9.71□□□□□ -0.85
HPS4-209ENST00000466781 NOC4LQ9BVI4 516 aaKnown RBP9.71□□□□□ -0.85
HPS4-209ENST00000466781 HELLSQ9NRZ9 838 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 NKIRAS1Q9NYS0 192 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 STIM2Q9P246 746 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 USP6P35125 1406 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 TLDC2A0PJX2 215 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 HSPA1LP34931 641 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 MNAT1P51948 309 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 MCM6Q14566 821 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 KARSQ15046 597 aaKnown RBP9.71□□□□□ -0.85
HPS4-209ENST00000466781 ZNF569Q5MCW4 686 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 DACT1Q9NYF0 836 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 TACC3Q9Y6A5 838 aa9.71□□□□□ -0.85
HPS4-209ENST00000466781 TUBB4AP04350 444 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 FYB2Q5VWT5 728 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 INTS8Q75QN2 995 aaKnown RBP9.71□□□□□ -0.86
HPS4-209ENST00000466781 ANKRD44Q8N8A2 993 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 PKNOX2Q96KN3 472 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 PRIMPOLQ96LW4 560 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 CPLX4Q7Z7G2 160 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 WDR66Q8TBY9 1149 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 CNKSR1Q969H4 720 aa9.71□□□□□ -0.86
HPS4-209ENST00000466781 LUC7L2Q9Y383 392 aaKnown RBP9.71□□□□□ -0.86
HPS4-209ENST00000466781 KRT19P08727 400 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 CRKLP46109 303 aaKnown RBP9.7□□□□□ -0.86
HPS4-209ENST00000466781 VAV2P52735 878 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 TUBB4BP68371 445 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 PDE4DQ08499 809 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 KLHL40Q2TBA0 621 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 CREB3L3Q68CJ9 461 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 UBL4BQ8N7F7 174 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 LOC102724428A0A0B4J2F2 783 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 SIK1P57059 783 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 DNM1Q05193 864 aaKnown RBP9.7□□□□□ -0.86
HPS4-209ENST00000466781 CDC42BPBQ9Y5S2 1711 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 NR1I2O75469 434 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 PPP2R5DQ14738 602 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 SMCR8Q8TEV9 937 aaPredicted RBP9.7□□□□□ -0.86
HPS4-209ENST00000466781 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.7□□□□□ -0.86
HPS4-209ENST00000466781 RSPH14Q9UHP6 348 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 PPP2R5CQ13362 524 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 HDAC1Q13547 482 aaPredicted RBP9.7□□□□□ -0.86
HPS4-209ENST00000466781 MAP7Q14244 749 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 MAEAQ7L5Y9 396 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 SWAP70Q9UH65 585 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 NPC1L1Q9UHC9 1359 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 P4HA1P13674 534 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 CNGA1P29973 690 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 RILPL1Q5EBL4 403 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 FAM182BQ5T319 152 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 USPL1Q5W0Q7 1092 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 TAOK1Q7L7X3 1001 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 STMN2Q93045 179 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 AS3MTQ9HBK9 375 aa9.7□□□□□ -0.86
HPS4-209ENST00000466781 ELP1O95163 1332 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 RUFY3Q7L099 469 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 DHX32Q7L7V1 743 aaKnown RBP9.69□□□□□ -0.86
HPS4-209ENST00000466781 LZTFL1Q9NQ48 299 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 RAD50Q92878 1312 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 ARHGAP31Q2M1Z3 1444 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 EYA2O00167 538 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 EIF4A1P60842 406 aaKnown RBP9.69□□□□□ -0.86
HPS4-209ENST00000466781 RSPH3Q86UC2 560 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 CNGA4Q8IV77 575 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 KRT222Q8N1A0 295 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 DCPSQ96C86 337 aaKnown RBP9.69□□□□□ -0.86
HPS4-209ENST00000466781 MED10Q9BTT4 135 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 CLTCL1P53675 1640 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 USP19O94966 1318 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 PPEF1O14829 653 aaPredicted RBP9.69□□□□□ -0.86
HPS4-209ENST00000466781 RBM6P78332 1123 aaKnown RBP9.69□□□□□ -0.86
HPS4-209ENST00000466781 DLGAP5Q15398 846 aa9.69□□□□□ -0.86
HPS4-209ENST00000466781 CCDC186Q7Z3E2 898 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms