RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CSRNP2Q9H175 543 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 ERLIN2O94905 339 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 PLCD1P51178 756 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 APOA5Q6Q788 366 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 MMS22LQ6ZRQ5 1243 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 ZKSCAN3Q9BRR0 538 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 BRMS1Q9HCU9 246 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 TAB2Q9NYJ8 693 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 ADD3Q9UEY8 706 aaKnown RBP13.27□□□□□ -0.29
CPSF3-202ENST00000460593 FBXO2Q9UK22 296 aaPredicted RBP13.27□□□□□ -0.29
CPSF3-202ENST00000460593 RFX7Q2KHR2 1363 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 CDHR2Q9BYE9 1310 aa13.27□□□□□ -0.29
CPSF3-202ENST00000460593 FOXO4P98177 505 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 STIM1Q13586 685 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 EFCAB13Q8IY85 973 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 ZMYM6O95789 1325 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 SYNRGQ9UMZ2 1314 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 ZC3H4Q9UPT8 1303 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 hCG_1642624A0A1W2PR95 340 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 SARSP49591 514 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 AMPD2Q01433 879 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 KCNV1Q6PIU1 500 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 DIS3L2Q8IYB7 885 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 CCDC148Q8NFR7 591 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 EEF2KMTQ96G04 330 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 BLZF1Q9H2G9 400 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 ANGEL1Q9UNK9 670 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 CTNND2Q9UQB3 1225 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 FAM169AQ9Y6X4 670 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 FAM237AA0A1B0GTK4 181 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 GOLGA8AA7E2F4 631 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 AGPSO00116 658 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 ACTN4O43707 911 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 EZH2Q15910 746 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 CT47A1Q5JQC4 288 aaPredicted RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 MCTP2Q6DN12 878 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 RRP36Q96EU6 259 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 MED4Q9NPJ6 270 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 FAM217BQ9NTX9 383 aaPredicted RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 AXIN2Q9Y2T1 843 aa13.26□□□□□ -0.29
CPSF3-202ENST00000460593 REXO2Q9Y3B8 237 aaKnown RBP13.26□□□□□ -0.29
CPSF3-202ENST00000460593 TNRQ92752 1358 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 PES1O00541 588 aaKnown RBP13.25□□□□□ -0.29
CPSF3-202ENST00000460593 WHAMMP3Q1A5X7 153 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 TEX2Q8IWB9 1127 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 GBP3Q9H0R5 595 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 SLIT1O75093 1534 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 A0A087WUV0 522 aaPredicted RBP13.25□□□□□ -0.29
CPSF3-202ENST00000460593 KCNA6P17658 529 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 HNRNPH1P31943 449 aaKnown RBP13.25□□□□□ -0.29
CPSF3-202ENST00000460593 USP14P54578 494 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 CASP7P55210 303 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 PIP4K2BP78356 416 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 C2orf54Q08AI8 447 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 NOSTRINQ8IVI9 506 aa13.25□□□□□ -0.29
CPSF3-202ENST00000460593 N4BP3O15049 544 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 PBX1P40424 430 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 IRAK1P51617 712 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 PPARAQ07869 468 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 NTRK3Q16288 839 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 BCAS4Q8TDM0 211 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 ABHD10Q9NUJ1 306 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 WWC3Q9ULE0 1092 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 MYH8P13535 1937 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 SH2B2O14492 632 aaPredicted RBP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 ZBTB43O43298 467 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 KRT9P35527 623 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 SELENOOQ9BVL4 669 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 ACBD3Q9H3P7 528 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 CABP5Q9NP86 173 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 SMARCAL1Q9NZC9 954 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 NWD2Q9ULI1 1742 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 MYO1FO00160 1098 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 PDE2AO00408 941 aaPredicted RBP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 MYO1BO43795 1136 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 PTPREP23469 700 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 MATR3P43243 847 aaKnown RBP eCLIP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 RRP12Q5JTH9 1297 aaKnown RBP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 TTLL7Q6ZT98 887 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 LRP10Q7Z4F1 713 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 HDAC7Q8WUI4 952 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 CRACR2AQ9BSW2 395 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 ZBTB3Q9H5J0 574 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 DACH1Q9UI36 760 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 TTF2Q9UNY4 1162 aaKnown RBP13.24□□□□□ -0.29
CPSF3-202ENST00000460593 DUSP10Q9Y6W6 482 aa13.24□□□□□ -0.29
CPSF3-202ENST00000460593 GOLGA6CA6NDK9 693 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 WNT7AO00755 349 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 GOLGA6DP0CG33 693 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 GNGT1P63211 74 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 KRT31Q15323 416 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 SPATA1Q5VX52 437 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 COG1Q8WTW3 980 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 FAM212AQ96EL1 285 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 XAGE2Q96GT9 111 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 PSMB7Q99436 277 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 GOLGA6AQ9NYA3 693 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 DIP2AQ14689 1571 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms