RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RRP1BQ14684 758 aaKnown RBP16.23■□□□□ 0.19
HMGB3-204ENST00000448905 NUDT12Q9BQG2 462 aa16.23■□□□□ 0.19
HMGB3-204ENST00000448905 CWC22Q9HCG8 908 aaKnown RBP16.23■□□□□ 0.19
HMGB3-204ENST00000448905 NOP58Q9Y2X3 529 aaKnown RBP16.23■□□□□ 0.19
HMGB3-204ENST00000448905 USP5P45974 858 aa16.22■□□□□ 0.19
HMGB3-204ENST00000448905 TTC6Q86TZ1 520 aa16.22■□□□□ 0.19
HMGB3-204ENST00000448905 SOCS4Q8WXH5 440 aa16.22■□□□□ 0.19
HMGB3-204ENST00000448905 NBPF3Q9H094 633 aa16.22■□□□□ 0.19
HMGB3-204ENST00000448905 TNNQ9UQP3 1299 aa16.22■□□□□ 0.19
HMGB3-204ENST00000448905 FLT1P17948 1338 aa16.21■□□□□ 0.19
HMGB3-204ENST00000448905 IDH1O75874 414 aaKnown RBP16.21■□□□□ 0.19
HMGB3-204ENST00000448905 GLRX3O76003 335 aaKnown RBP16.21■□□□□ 0.19
HMGB3-204ENST00000448905 XRCC5P13010 732 aaKnown RBP16.21■□□□□ 0.19
HMGB3-204ENST00000448905 HERVK_113P62684 666 aa16.21■□□□□ 0.19
HMGB3-204ENST00000448905 MAP3K12Q12852 859 aa16.21■□□□□ 0.19
HMGB3-204ENST00000448905 USP17L2Q6R6M4 530 aa16.21■□□□□ 0.19
HMGB3-204ENST00000448905 ITPRIPQ8IWB1 547 aa16.21■□□□□ 0.19
HMGB3-204ENST00000448905 SAP30BPQ9UHR5 308 aaKnown RBP16.21■□□□□ 0.19
HMGB3-204ENST00000448905 MGAMO43451 1857 aa16.2■□□□□ 0.18
HMGB3-204ENST00000448905 CYP2B6P20813 491 aa16.2■□□□□ 0.18
HMGB3-204ENST00000448905 ERC1Q8IUD2 1116 aa16.2■□□□□ 0.18
HMGB3-204ENST00000448905 CCDC8Q9H0W5 538 aaPredicted RBP16.2■□□□□ 0.18
HMGB3-204ENST00000448905 ZBTB21Q9ULJ3 1066 aa16.2■□□□□ 0.18
HMGB3-204ENST00000448905 GDF11O95390 407 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 USP14P54578 494 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 CCNA1P78396 465 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 HSP90AB4PQ58FF6 505 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 ADGRA1Q86SQ6 560 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 FEZ1Q99689 392 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 CABP5Q9NP86 173 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 PIH1D3Q9NQM4 214 aaKnown RBP16.19■□□□□ 0.18
HMGB3-204ENST00000448905 RBPJLQ9UBG7 517 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 MYH2Q9UKX2 1941 aa16.19■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L15C9J2P7 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L13C9JLJ4 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L11C9JVI0 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L18D6R9N7 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L22D6RA61 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L17D6RBQ6 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L19D6RCP7 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L20D6RJB6 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 RGS2P41220 211 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 DYNLL1P63167 89 aaKnown RBP16.18■□□□□ 0.18
HMGB3-204ENST00000448905 USP17L24Q0WX57 530 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 PRO3102Q9H379 93 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 C11orf49Q9H6J7 331 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 STAP2Q9UGK3 403 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 SERPINB13Q9UIV8 391 aa16.18■□□□□ 0.18
HMGB3-204ENST00000448905 DBNLQ9UJU6 430 aaKnown RBP16.18■□□□□ 0.18
HMGB3-204ENST00000448905 GH2P01242 217 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 ZKSCAN1P17029 563 aaPredicted RBP16.17■□□□□ 0.18
HMGB3-204ENST00000448905 ERVK-9P63128 1117 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 ERVK-24P63145 666 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 JAG1P78504 1218 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 RAB3GAP1Q15042 981 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 TTF1Q15361 905 aaPredicted RBP16.17■□□□□ 0.18
HMGB3-204ENST00000448905 CERKLQ49MI3 558 aaPredicted RBP16.17■□□□□ 0.18
HMGB3-204ENST00000448905 TATDN1Q6P1N9 297 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 PLEKHH3Q7Z736 793 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 MAGEB6Q8N7X4 407 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 MIGA1Q8NAN2 632 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 EAF2Q96CJ1 260 aaPredicted RBP16.17■□□□□ 0.18
HMGB3-204ENST00000448905 PAGR1Q9BTK6 254 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 C1orf115Q9H7X2 142 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 DNAJC18Q9H819 358 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 EMILIN3Q9NT22 766 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 OGDHLQ9ULD0 1010 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 RABGAP1Q9Y3P9 1069 aa16.17■□□□□ 0.18
HMGB3-204ENST00000448905 MS4A1P11836 297 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 PRKAR2AP13861 404 aaKnown RBP16.16■□□□□ 0.18
HMGB3-204ENST00000448905 HNRNPUQ00839 825 aaKnown RBP eCLIP16.16■□□□□ 0.18
HMGB3-204ENST00000448905 Q3C1V9 767 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 TRIB2Q92519 343 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 EDC3Q96F86 508 aaKnown RBP16.16■□□□□ 0.18
HMGB3-204ENST00000448905 EHD4Q9H223 541 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 TXNRD2Q9NNW7 524 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 DOCK2Q92608 1830 aa16.16■□□□□ 0.18
HMGB3-204ENST00000448905 POLR3DP05423 398 aaPredicted RBP16.15■□□□□ 0.18
HMGB3-204ENST00000448905 BMP8BP34820 402 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 TRIM32Q13049 653 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 ABCB5Q2M3G0 1257 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 GPR142Q7Z601 462 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 AACSQ86V21 672 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 C7orf61Q8IZ16 206 aa16.15■□□□□ 0.18
HMGB3-204ENST00000448905 DIS3LQ8TF46 1054 aaKnown RBP16.15■□□□□ 0.18
HMGB3-204ENST00000448905 TRIOBPQ9H2D6 2365 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 ZYXQ15942 572 aaKnown RBP16.14■□□□□ 0.17
HMGB3-204ENST00000448905 MAP3K21Q5TCX8 1036 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 MFSD14CQ5VZR4 134 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 C12orf42Q96LP6 360 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 KIAA1683Q9H0B3 1180 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 TLR7Q9NYK1 1049 aaKnown RBP16.14■□□□□ 0.17
HMGB3-204ENST00000448905 IVNS1ABPQ9Y6Y0 642 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 CEP290O15078 2479 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 PHIPQ8WWQ0 1821 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 SZT2Q5T011 3432 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 DOCK3Q8IZD9 2030 aa16.14■□□□□ 0.17
HMGB3-204ENST00000448905 MAGEB6P1A0A0J9YX57 407 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 CACNB2Q08289 660 aaPredicted RBP16.13■□□□□ 0.17
HMGB3-204ENST00000448905 MAP2K5Q13163 448 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms