RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 NR2E3Q9Y5X4 410 aa16.73■□□□□ 0.27
PDLIM2-213ENST00000448520 TRIOBPQ9H2D6 2365 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 C19orf81C9J6K1 198 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 INHAP05111 366 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 CYP2E1P05181 493 aaPredicted RBP16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 FXR1P51114 621 aaKnown RBP eCLIP16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 HMGCS2P54868 508 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 CERS3Q8IU89 383 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 TRIM34Q9BYJ4 488 aa16.72■□□□□ 0.27
PDLIM2-213ENST00000448520 TFRCP02786 760 aaKnown RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 ELNP15502 786 aa16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 HOXA7P31268 230 aaPredicted RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 BACE1P56817 501 aa16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 RRP1BQ14684 758 aaKnown RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 TMED8Q6PL24 325 aaPredicted RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 BCL11AQ9H165 835 aa16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 ASCC2Q9H1I8 757 aaPredicted RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 RWDD1Q9H446 243 aaPredicted RBP16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 TMOD4Q9NZQ9 345 aa16.71■□□□□ 0.27
PDLIM2-213ENST00000448520 FARP2O94887 1054 aaPredicted RBP16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 ZAP70P43403 619 aa16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 MAPKAPK5Q8IW41 473 aa16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 CRACR2BQ8N4Y2 399 aaPredicted RBP16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 DCTPP1Q9H773 170 aa16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 TAOK2Q9UL54 1235 aa16.7■□□□□ 0.26
PDLIM2-213ENST00000448520 ATAD5Q96QE3 1844 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 HLA-DOAP06340 250 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 IRX3P78415 501 aaPredicted RBP16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 DEFB118Q96PH6 123 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 PAK6Q9NQU5 681 aaPredicted RBP16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 MORF4L1Q9UBU8 362 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 GJD2Q9UKL4 321 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 PALD1Q9ULE6 856 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 FLT1P17948 1338 aa16.69■□□□□ 0.26
PDLIM2-213ENST00000448520 USP17L10C9JJH3 530 aa16.68■□□□□ 0.26
PDLIM2-213ENST00000448520 SMARCA5O60264 1052 aaPredicted RBP16.68■□□□□ 0.26
PDLIM2-213ENST00000448520 CYP7A1P22680 504 aa16.68■□□□□ 0.26
PDLIM2-213ENST00000448520 CRISPLD2Q9H0B8 497 aa16.68■□□□□ 0.26
PDLIM2-213ENST00000448520 DBNLQ9UJU6 430 aaKnown RBP16.68■□□□□ 0.26
PDLIM2-213ENST00000448520 HMGCRP04035 888 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 MTMR2Q13614 643 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 CHRDL2Q6WN34 429 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 ADGRA1Q86SQ6 560 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 SKAP1Q86WV1 359 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 ERC1Q8IUD2 1116 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 SMC5Q8IY18 1101 aa16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 GTF3C2Q8WUA4 911 aaPredicted RBP16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 EAF2Q96CJ1 260 aaPredicted RBP16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 P2RX7Q99572 595 aaKnown RBP16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 CCDC8Q9H0W5 538 aaPredicted RBP16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 PIH1D3Q9NQM4 214 aaKnown RBP16.67■□□□□ 0.26
PDLIM2-213ENST00000448520 LOC285556D6RIA3 1793 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 IDH1O75874 414 aaKnown RBP16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 ANKLE1Q8NAG6 615 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 GPRC5AQ8NFJ5 357 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 DNAJC18Q9H819 358 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 HMX1Q9NP08 348 aaPredicted RBP16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 IL1RAPL2Q9NP60 686 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 RPTORQ8N122 1335 aa16.66■□□□□ 0.26
PDLIM2-213ENST00000448520 MYO5AQ9Y4I1 1855 aaKnown RBP16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 EVI5O60447 810 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 MAP3K12Q12852 859 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 HSP90AB4PQ58FF6 505 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 USP17L2Q6R6M4 530 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 NECAB2Q7Z6G3 386 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 RHPN1Q8TCX5 695 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 RBM27Q9P2N5 1060 aaKnown RBP16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 ZBTB21Q9ULJ3 1066 aa16.65■□□□□ 0.26
PDLIM2-213ENST00000448520 XRCC5P13010 732 aaKnown RBP16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 USP5P45974 858 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 HERVK_113P62684 666 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 DYNLL1P63167 89 aaKnown RBP16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 JAG1P78504 1218 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 ANKRD45Q5TZF3 282 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 TTC6Q86TZ1 520 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 TRMT44Q8IYL2 757 aaKnown RBP16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 NUDT12Q9BQG2 462 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 SAP30BPQ9UHR5 308 aaKnown RBP16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 CDK5RAP2Q96SN8 1893 aa16.64■□□□□ 0.25
PDLIM2-213ENST00000448520 FOCADQ5VW36 1801 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 RAB11FIP3O75154 756 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 GDF11O95390 407 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 MAPK4P31152 587 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 TATDN1Q6P1N9 297 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 CENPQQ7L2Z9 268 aaPredicted RBP16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 CCAR1Q8IX12 1150 aaKnown RBP16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 MAGEB6Q8N7X4 407 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 SOCS4Q8WXH5 440 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 PAWRQ96IZ0 340 aaKnown RBP16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 EHD4Q9H223 541 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 RBPJLQ9UBG7 517 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 SERPINB13Q9UIV8 391 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 MAST2Q6P0Q8 1798 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 SIPA1L1O43166 1804 aa16.63■□□□□ 0.25
PDLIM2-213ENST00000448520 MYH1P12882 1939 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 USP14P54578 494 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 TTF1Q15361 905 aaPredicted RBP16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 KIF1BPQ96EK5 621 aa16.62■□□□□ 0.25
PDLIM2-213ENST00000448520 LRRCC1Q9C099 1032 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms