RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 IFIH1Q9BYX4 1025 aaKnown RBP8.65□□□□□ -1.02
NEDD9-204ENST00000448183 BAIAP2L1Q9UHR4 511 aa8.65□□□□□ -1.02
NEDD9-204ENST00000448183 DDX41Q9UJV9 622 aaKnown RBP8.65□□□□□ -1.02
NEDD9-204ENST00000448183 NSFL1CQ9UNZ2 370 aaKnown RBP8.65□□□□□ -1.02
NEDD9-204ENST00000448183 SHANK2Q9UPX8 1470 aa8.65□□□□□ -1.02
NEDD9-204ENST00000448183 DUOX2Q9NRD8 1548 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 RIMS2Q9UQ26 1411 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 EFCAB8A8MWE9 144 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 BACH1O14867 736 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 HGSO14964 777 aaPredicted RBP8.65□□□□□ -1.03
NEDD9-204ENST00000448183 SNX16P57768 344 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 HERC4Q5GLZ8 1057 aaPredicted RBP8.65□□□□□ -1.03
NEDD9-204ENST00000448183 MYSM1Q5VVJ2 828 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 PEX26Q7Z412 305 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 OR8K1Q8NGG5 319 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 METTL22Q9BUU2 404 aaPredicted RBP8.65□□□□□ -1.03
NEDD9-204ENST00000448183 LRWD1Q9UFC0 647 aa8.65□□□□□ -1.03
NEDD9-204ENST00000448183 ARHGEF12Q9NZN5 1544 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 PNMA6EA0A0J9YXQ4 647 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 SARNPP82979 210 aaKnown RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 NONOQ15233 471 aaKnown RBP eCLIP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 MRFAP1L1Q96HT8 127 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 ODF2LQ9ULJ1 636 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 TNRQ92752 1358 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 CCNT1O60563 726 aaKnown RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 MAP2K2P36507 400 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 ADKP55263 362 aaKnown RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 SFMBT2Q5VUG0 894 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 KRT25Q7Z3Z0 450 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 PLBD2Q8NHP8 589 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 PHKBQ93100 1093 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 MRRFQ96E11 262 aaKnown RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 ARMT1Q9H993 441 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 ZNF518AQ6AHZ1 1483 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 MAP3K19Q56UN5 1328 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 KIF3CO14782 793 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 SMTNP53814 917 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 IRX5P78411 483 aaPredicted RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 PPP1R21Q6ZMI0 780 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 TRIM58Q8NG06 486 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 SNX29Q8TEQ0 813 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 XAGE2Q96GT9 111 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 RAB17Q9H0T7 212 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 CFAP74Q9C0B2 1584 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 INSRP06213 1382 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 CASQ2O14958 399 aaPredicted RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 RNF40O75150 1001 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 LRMPQ12912 555 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 PUM3Q15397 648 aaKnown RBP8.64□□□□□ -1.03
NEDD9-204ENST00000448183 ME3Q16798 604 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 CCDC105Q8IYK2 499 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 KLHDC4Q8TBB5 520 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 GDAP1L1Q96MZ0 367 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 TRIM35Q9UPQ4 493 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 SSH2Q76I76 1423 aa8.64□□□□□ -1.03
NEDD9-204ENST00000448183 CLGNO14967 610 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 IL2RBP14784 551 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 KRT15P19012 456 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 GNGT1P63211 74 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 ANKRD20A3Q5VUR7 823 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PHLDB2Q86SQ0 1253 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 TEX11Q8IYF3 940 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 COL17A1Q9UMD9 1497 aaPredicted RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 GAS8O95995 478 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 RASSF2P50749 326 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 LGSNQ5TDP6 509 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 DENND2CQ68D51 928 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 SPATS2Q86XZ4 545 aaKnown RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 KIFC2Q96AC6 838 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 SERTAD1Q9UHV2 236 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 STK24Q9Y6E0 443 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 ZMYM3Q14202 1370 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 FAM89AQ96GI7 184 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 MYL10Q9BUA6 226 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 DSCC1Q9BVC3 393 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PPANQ9NQ55 473 aaKnown RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PARP2Q9UGN5 583 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 UHRF1BP1LA0JNW5 1464 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 DTNBO60941 627 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PRDM1O75626 825 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PFKFB1P16118 471 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 ITGA6P23229 1130 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 HOXC9P31274 260 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 ITIH3Q06033 890 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PNOCQ13519 176 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 TYW1BQ6NUM6 668 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 RRAGAQ7L523 313 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 RNF10Q8N5U6 811 aaKnown RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 GPCPD1Q9NPB8 672 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 MED4Q9NPJ6 270 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 FAM207AQ9NSI2 230 aaPredicted RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 EXOC7Q9UPT5 735 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 PPP2R2CQ9Y2T4 447 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 CAPN7Q9Y6W3 813 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 ABCC1P33527 1531 aa8.63□□□□□ -1.03
NEDD9-204ENST00000448183 IBTKQ9P2D0 1353 aaPredicted RBP8.63□□□□□ -1.03
NEDD9-204ENST00000448183 RGS16O15492 202 aaPredicted RBP8.62□□□□□ -1.03
NEDD9-204ENST00000448183 NR1I2O75469 434 aa8.62□□□□□ -1.03
NEDD9-204ENST00000448183 ZWINTO95229 277 aa8.62□□□□□ -1.03
NEDD9-204ENST00000448183 GEN1Q17RS7 908 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms