RNA–Protein interactions for RNA: ENST00000445064.1

SEC13-213, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 5

Gene SEC13, Length 669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-213	ENST00000445064	IGSF3	O75054	1194 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	TFRC	P02786	760 aa	Known RBP	18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	MAGEB6	Q8N7X4	407 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	DEFB118	Q96PH6	123 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	P2RX7	Q99572	595 aa	Known RBP	18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	TMOD4	Q9NZQ9	345 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	CDK5RAP2	Q96SN8	1893 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	LOC285556	D6RIA3	1793 aa		18.85	■□□□□ 0.61
SEC13-213	ENST00000445064	USP17L10	C9JJH3	530 aa		18.84	■□□□□ 0.61
SEC13-213	ENST00000445064	PEX10	O60683	326 aa		18.84	■□□□□ 0.61
SEC13-213	ENST00000445064	HLA-DOA	P06340	250 aa		18.84	■□□□□ 0.61
SEC13-213	ENST00000445064	AACS	Q86V21	672 aa		18.84	■□□□□ 0.61
SEC13-213	ENST00000445064	HTATIP2	Q9BUP3	242 aa		18.84	■□□□□ 0.61
SEC13-213	ENST00000445064	C19orf81	C9J6K1	198 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	FARP2	O94887	1054 aa	Predicted RBP	18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	HOXA7	P31268	230 aa	Predicted RBP	18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	USP5	P45974	858 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	FXR1	P51114	621 aa	Known RBP eCLIP	18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	IRX3	P78415	501 aa	Predicted RBP	18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	IL1RAPL2	Q9NP60	686 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	GJD2	Q9UKL4	321 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	ZBTB21	Q9ULJ3	1066 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	DOCK3	Q8IZD9	2030 aa		18.83	■□□□□ 0.6
SEC13-213	ENST00000445064	FOCAD	Q5VW36	1801 aa		18.82	■□□□□ 0.6
SEC13-213	ENST00000445064	ERC1	Q8IUD2	1116 aa		18.82	■□□□□ 0.6
SEC13-213	ENST00000445064	GINM1	Q9NU53	330 aa		18.82	■□□□□ 0.6
SEC13-213	ENST00000445064	MORF4L1	Q9UBU8	362 aa		18.82	■□□□□ 0.6
SEC13-213	ENST00000445064	MAP3K12	Q12852	859 aa		18.81	■□□□□ 0.6
SEC13-213	ENST00000445064	CHRDL2	Q6WN34	429 aa		18.81	■□□□□ 0.6
SEC13-213	ENST00000445064	TXNRD2	Q9NNW7	524 aa		18.81	■□□□□ 0.6
SEC13-213	ENST00000445064	PAK6	Q9NQU5	681 aa	Predicted RBP	18.81	■□□□□ 0.6
SEC13-213	ENST00000445064	EMILIN3	Q9NT22	766 aa		18.81	■□□□□ 0.6
SEC13-213	ENST00000445064	ZBED9	Q6R2W3	1325 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	APBB1	O00213	710 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	GH2	P01242	217 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	HERVK_113	P62684	666 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	TRIM32	Q13049	653 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064		Q3C1V9	767 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	TATDN1	Q6P1N9	297 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	RHPN1	Q8TCX5	695 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	BCL11A	Q9H165	835 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	RBPJL	Q9UBG7	517 aa		18.8	■□□□□ 0.6
SEC13-213	ENST00000445064	USP17L2	Q6R6M4	530 aa		18.79	■□□□□ 0.6
SEC13-213	ENST00000445064	CERS3	Q8IU89	383 aa		18.79	■□□□□ 0.6
SEC13-213	ENST00000445064	GPRC5A	Q8NFJ5	357 aa		18.79	■□□□□ 0.6
SEC13-213	ENST00000445064	CRISPLD2	Q9H0B8	497 aa		18.79	■□□□□ 0.6
SEC13-213	ENST00000445064	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	18.79	■□□□□ 0.6
SEC13-213	ENST00000445064	MYH1	P12882	1939 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	HMGCR	P04035	888 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	CYP2B6	P20813	491 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	ZYX	Q15942	572 aa	Known RBP	18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	HSP90AB4P	Q58FF6	505 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	TTC6	Q86TZ1	520 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	PAWR	Q96IZ0	340 aa	Known RBP	18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	RBM27	Q9P2N5	1060 aa	Known RBP	18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	SERPINB13	Q9UIV8	391 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	NR2E3	Q9Y5X4	410 aa		18.78	■□□□□ 0.6
SEC13-213	ENST00000445064	CAPN2	P17655	700 aa		18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	PLCD1	P51178	756 aa		18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	RAB3GAP1	Q15042	981 aa		18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	CERKL	Q49MI3	558 aa	Predicted RBP	18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	POTEE	Q6S8J3	1075 aa		18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	RIOK1	Q9BRS2	568 aa	Known RBP	18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	PAGR1	Q9BTK6	254 aa		18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	HMX1	Q9NP08	348 aa	Predicted RBP	18.77	■□□□□ 0.6
SEC13-213	ENST00000445064	RPTOR	Q8N122	1335 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	MAGEB6P1	A0A0J9YX57	407 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	EVI5	O60447	810 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	MS4A1	P11836	297 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	TTF1	Q15361	905 aa	Predicted RBP	18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	SLC9C2	Q5TAH2	1124 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	CLASRP	Q8N2M8	674 aa	Known RBP	18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	TRIB2	Q92519	343 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	NUDT12	Q9BQG2	462 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	EHD4	Q9H223	541 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	COG6	Q9Y2V7	657 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	PLXNB2	O15031	1838 aa		18.76	■□□□□ 0.59
SEC13-213	ENST00000445064	POLR3D	P05423	398 aa	Predicted RBP	18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	ERVK-9	P63128	1117 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	ERVK-24	P63145	666 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	ABCB5	Q2M3G0	1257 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	TMED8	Q6PL24	325 aa	Predicted RBP	18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	CCAR1	Q8IX12	1150 aa	Known RBP	18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	SIRT2	Q8IXJ6	389 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	ACER1	Q8TDN7	264 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	DIS3L	Q8TF46	1054 aa	Known RBP	18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	KIF1BP	Q96EK5	621 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	FEZ1	Q99689	392 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	PORCN	Q9H237	461 aa		18.75	■□□□□ 0.59
SEC13-213	ENST00000445064	GOLIM4	O00461	696 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	IFIT2	P09913	472 aa	Known RBP	18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	PDE6A	P16499	860 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	MAPK4	P31152	587 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	SHMT1	P34896	483 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	NECAB2	Q7Z6G3	386 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	C12orf42	Q96LP6	360 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	DNAJC2	Q99543	621 aa	Known RBP	18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	CABP5	Q9NP86	173 aa		18.74	■□□□□ 0.59
SEC13-213	ENST00000445064	USP17L15	C9J2P7	530 aa		18.73	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms