RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 C3orf20Q8ND61 904 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 DHX32Q7L7V1 743 aaKnown RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 PNMA8AQ86V59 439 aaPredicted RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 DNM2P50570 870 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 CCDC63Q8NA47 563 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 ESRRBO95718 433 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 DTHD1Q6ZMT9 781 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 RTN1Q16799 776 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 KRT39Q6A163 491 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 FERMT3Q86UX7 667 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 IFT81Q8WYA0 676 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 HYOU1Q9Y4L1 999 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 SBNO1A3KN83 1393 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 IL15P40933 162 aaPredicted RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 ZNF530Q6P9A1 599 aaPredicted RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 GRAMD1AQ96CP6 724 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 TRIM15Q9C019 465 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 RRP15Q9Y3B9 282 aaKnown RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 CALUO43852 315 aaPredicted RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 EPB41P11171 864 aaKnown RBP7.95□□□□□ -1.14
VPS53-204ENST00000437048 PYGBP11216 843 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 KRT71Q3SY84 523 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 IGSF22Q8N9C0 903 aa7.95□□□□□ -1.14
VPS53-204ENST00000437048 BTBD11A6QL63 1104 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 HNRNPRO43390 633 aaKnown RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 PDE1AP54750 535 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 PDZD4Q76G19 769 aaPredicted RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 FAM129AQ9BZQ8 928 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 BAG5Q9UL15 447 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 SYNRGQ9UMZ2 1314 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 CCDC93Q567U6 631 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 MAK16Q9BXY0 300 aaKnown RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 HELLSQ9NRZ9 838 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 KIAA0586Q9BVV6 1533 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 ZNF644Q9H582 1327 aaPredicted RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 CAPN7Q9Y6W3 813 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 FAM170AA1A519 330 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 F8W8V4 182 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 GOLGA8MH3BSY2 632 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 RIOK3O14730 519 aaKnown RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 STX2P32856 288 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 NONOQ15233 471 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS53-204ENST00000437048 TTLL7Q6ZT98 887 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 ANKRD35Q8N283 1001 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 NT5C3AQ9H0P0 336 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 ARHGAP42A6NI28 874 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 SMTNP53814 917 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 SYCP2LQ5T4T6 812 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 HACD3Q9P035 362 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 TTC4O95801 387 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 RNF123Q5XPI4 1314 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 PASKQ96RG2 1323 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 LAD1O00515 517 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 RPS6KA1Q15418 735 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 ZKSCAN3Q9BRR0 538 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 NBPF3Q9H094 633 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 PACSIN2Q9UNF0 486 aaPredicted RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 KRT2P35908 639 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 HDAC4P56524 1084 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 PRPF38AQ8NAV1 312 aaKnown RBP7.94□□□□□ -1.14
VPS53-204ENST00000437048 AMOTL2Q9Y2J4 779 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 CLASP1Q7Z460 1538 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 FLIIQ13045 1269 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 TEX9Q8N6V9 391 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 DIABLOQ9NR28 239 aa7.94□□□□□ -1.14
VPS53-204ENST00000437048 SBNO2Q9Y2G9 1366 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 CAV1Q03135 178 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 CCDC125Q86Z20 511 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 DRC1Q96MC2 740 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 CSRNP1Q96S65 589 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 C10orf88Q9H8K7 445 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 ARHGEF9O43307 516 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 PCYT1AP49585 367 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 CDAN1Q8IWY9 1227 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 OR8K1Q8NGG5 319 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 TSC22D3Q99576 134 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 ALG1Q9BT22 464 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 ZNF277Q9NRM2 450 aaPredicted RBP7.93□□□□□ -1.14
VPS53-204ENST00000437048 SH2D4AQ9H788 454 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 KDM3AQ9Y4C1 1321 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 IKBKBO14920 756 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 CUL4BQ13620 913 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 KCNK9Q9NPC2 374 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 A0A1W2PQ27 194 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 A0A1W2PQ64 194 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 A0A1W2PQD8 194 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 METTL24Q5JXM2 366 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 METTL14Q9HCE5 456 aaKnown RBP7.93□□□□□ -1.14
VPS53-204ENST00000437048 GOLGA8TH3BQL2 631 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 GOLGA8HP0CJ92 632 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 EEF1GP26641 437 aaKnown RBP7.93□□□□□ -1.14
VPS53-204ENST00000437048 CABP4P57796 275 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 SULT6B1Q6IMI4 303 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 IFNKQ9P0W0 207 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 BCAS4Q8TDM0 211 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 ABCC2Q92887 1545 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 GOLGA8JA6NMD2 632 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 IDH1O75874 414 aaKnown RBP7.93□□□□□ -1.14
VPS53-204ENST00000437048 TMED1Q13445 227 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms