RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 KRT40Q6A162 431 aa30.82■■■□□ 2.52
LDB1-202ENST00000425280 SLC44A5Q8NCS7 719 aa30.82■■■□□ 2.52
LDB1-202ENST00000425280 DDAH1O94760 285 aa30.81■■■□□ 2.52
LDB1-202ENST00000425280 KIF23Q02241 960 aaPredicted RBP30.81■■■□□ 2.52
LDB1-202ENST00000425280 CMTR1Q8N1G2 835 aaKnown RBP30.81■■■□□ 2.52
LDB1-202ENST00000425280 ADAMTSL1Q8N6G6 1762 aa30.81■■■□□ 2.52
LDB1-202ENST00000425280 ZNF646O15015 1829 aaPredicted RBP30.81■■■□□ 2.52
LDB1-202ENST00000425280 C21orf2O43822 256 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 CALM1P0DP23 149 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 CALM2P0DP24 149 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 CALM3P0DP25 149 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 AOC3Q16853 763 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 STRIP1Q5VSL9 837 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 RCSD1Q6JBY9 416 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 HHIPL2Q6UWX4 724 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 TRIM22Q8IYM9 498 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 USP28Q96RU2 1077 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 FTOQ9C0B1 505 aaKnown RBP eCLIP30.8■■■□□ 2.524e-9■□□□□ 10.6
LDB1-202ENST00000425280 KIF28PB7ZC32 967 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 CEBPZQ03701 1054 aaKnown RBP30.8■■■□□ 2.52
LDB1-202ENST00000425280 BRAPQ7Z569 592 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 WASF1Q92558 559 aa30.8■■■□□ 2.52
LDB1-202ENST00000425280 GUCY1A2P33402 732 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 FKBP1AP62942 108 aaKnown RBP30.79■■■□□ 2.52
LDB1-202ENST00000425280 KIAA2012Q0VF49 1180 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 CCDC183Q5T5S1 534 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 C16orf86Q6ZW13 317 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 CCDC82Q8N4S0 544 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 IL17RBQ9NRM6 502 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 RCOR1Q9UKL0 485 aa30.79■■■□□ 2.52
LDB1-202ENST00000425280 DACT2Q5SW24 774 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 TTLL6Q8N841 843 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 TEKT1Q969V4 418 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 PGBD1Q96JS3 809 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 RASA1P20936 1047 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 LRSAM1Q6UWE0 723 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 SUPT20HQ8NEM7 779 aa30.78■■■□□ 2.52
LDB1-202ENST00000425280 RBM28Q9NW13 759 aaKnown RBP30.78■■■□□ 2.52
LDB1-202ENST00000425280 ZNF444Q8N0Y2 327 aaPredicted RBP30.77■■■□□ 2.52
LDB1-202ENST00000425280 ZNF287Q9HBT7 754 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 DEXIO95424 95 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 CDK8P49336 464 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 FUT2Q10981 343 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 TRIM29Q14134 588 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 USP40Q9NVE5 1235 aa30.77■■■□□ 2.52
LDB1-202ENST00000425280 GOLGA6L4A6NEF3 574 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 WDHD1O75717 1129 aaPredicted RBP30.76■■■□□ 2.51
LDB1-202ENST00000425280 DPEP1P16444 411 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 KCNA3P22001 575 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 DGKHQ86XP1 1220 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 CCDC125Q86Z20 511 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 ANKS1AQ92625 1134 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 TCP11L1Q9NUJ3 509 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 TAOK2Q9UL54 1235 aa30.76■■■□□ 2.51
LDB1-202ENST00000425280 USP17L3A6NCW0 530 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 USP17L4A6NCW7 530 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 TSPY3P0CV98 308 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 TSPY8P0CW00 308 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 PICALMQ13492 652 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 MYSM1Q5VVJ2 828 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 APOBEC3HQ6NTF7 200 aaKnown RBP30.75■■■□□ 2.51
LDB1-202ENST00000425280 USP17L1Q7RTZ2 530 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 RNF26Q9BY78 433 aaPredicted RBP30.75■■■□□ 2.51
LDB1-202ENST00000425280 PLEKHA8P1O95397 391 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 CRKP46108 304 aa30.75■■■□□ 2.51
LDB1-202ENST00000425280 DDX4Q9NQI0 724 aaKnown RBP30.75■■■□□ 2.51
LDB1-202ENST00000425280 CCDC178Q5BJE1 867 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 CDC42EP5Q6NZY7 148 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 KIAA0825Q8IV33 1275 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 RTEL1Q9NZ71 1219 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 KIF13BQ9NQT8 1826 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 LIG1P18858 919 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 GRIPAP1Q4V328 841 aa30.74■■■□□ 2.51
LDB1-202ENST00000425280 MYH6P13533 1939 aa30.73■■■□□ 2.51
LDB1-202ENST00000425280 TMTC3Q6ZXV5 915 aa30.73■■■□□ 2.51
LDB1-202ENST00000425280 MRIQ9BWK5 157 aa30.73■■■□□ 2.51
LDB1-202ENST00000425280 PPIP5K2O43314 1243 aa30.72■■■□□ 2.51
LDB1-202ENST00000425280 CCDC93Q567U6 631 aa30.72■■■□□ 2.51
LDB1-202ENST00000425280 ZDHHC15Q96MV8 337 aa30.72■■■□□ 2.51
LDB1-202ENST00000425280 KAT14Q9H8E8 782 aa30.72■■■□□ 2.51
LDB1-202ENST00000425280 CTCFLQ8NI51 663 aaPredicted RBP30.72■■■□□ 2.51
LDB1-202ENST00000425280 U2AF2P26368 475 aaKnown RBP eCLIP30.71■■■□□ 2.51
LDB1-202ENST00000425280 PRPF3O43395 683 aaKnown RBP30.7■■■□□ 2.51
LDB1-202ENST00000425280 RTKN2Q8IZC4 609 aa30.7■■■□□ 2.51
LDB1-202ENST00000425280 PANK2Q9BZ23 570 aa30.7■■■□□ 2.51
LDB1-202ENST00000425280 CLIC4Q9Y696 253 aa30.7■■■□□ 2.51
LDB1-202ENST00000425280 LETM1O95202 739 aaPredicted RBP30.7■■■□□ 2.5
LDB1-202ENST00000425280 ZBTB7AO95365 584 aa30.7■■■□□ 2.5
LDB1-202ENST00000425280 MMP1P03956 469 aa30.7■■■□□ 2.5
LDB1-202ENST00000425280 HDLBPQ00341 1268 aaKnown RBP30.7■■■□□ 2.5
LDB1-202ENST00000425280 AKAP17AQ02040 695 aaKnown RBP30.7■■■□□ 2.5
LDB1-202ENST00000425280 POLR3EQ9NVU0 708 aa30.7■■■□□ 2.5
LDB1-202ENST00000425280 YDJCA8MPS7 323 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 GNL2Q13823 731 aaKnown RBP30.69■■■□□ 2.5
LDB1-202ENST00000425280 PKN1Q16512 942 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 PNMA1Q8ND90 353 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 BICD2Q8TD16 824 aa30.69■■■□□ 2.5
LDB1-202ENST00000425280 GNL3Q9BVP2 549 aaKnown RBP eCLIP30.69■■■□□ 2.5
LDB1-202ENST00000425280 SRBD1Q8N5C6 995 aaKnown RBP30.69■■■□□ 2.5
LDB1-202ENST00000425280 NEDD1Q8NHV4 660 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms