RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ORC4O43929 436 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 KDM4AO75164 1064 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 LARGE1O95461 756 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 POLR3DP05423 398 aaPredicted RBP7□□□□□ -1.29
HMGB3-202ENST00000419110 SCNN1DP51172 638 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 HMGN5P82970 282 aaKnown RBP7□□□□□ -1.29
HMGB3-202ENST00000419110 TMEM67Q5HYA8 995 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 RSBN1LQ6PCB5 846 aaPredicted RBP7□□□□□ -1.29
HMGB3-202ENST00000419110 CPLX2Q6PUV4 134 aaKnown RBP7□□□□□ -1.29
HMGB3-202ENST00000419110 NFXL1Q6ZNB6 911 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 MAPKAPK5Q8IW41 473 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 FBXL16Q8N461 479 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 NLGN2Q8NFZ4 835 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 TGFBRAP1Q8WUH2 860 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 RNF166Q96A37 237 aaPredicted RBP7□□□□□ -1.29
HMGB3-202ENST00000419110 ZDHHC15Q96MV8 337 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 GBP4Q96PP9 640 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 LRRC2Q9BYS8 371 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 AGXT2Q9BYV1 514 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 TPCN1Q9ULQ1 816 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 ZNRF3Q9ULT6 936 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 CCDC69A6NI79 296 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 GOLGA8AA7E2F4 631 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 YDJCA8MPS7 323 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 USP17L12C9JPN9 530 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 USP17L21D6R901 530 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 PSMD14O00487 310 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 CPLX1O14810 134 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 IFIT3O14879 490 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 DHX16O60231 1041 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RANBP6O60518 1105 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RAD17O75943 681 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 CDKL5O76039 1030 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 PDCP20941 246 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RPS12P25398 132 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 MMP14P50281 582 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RCAN1P53805 252 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 EIF6P56537 245 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 ANTXR2P58335 489 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RHBDL3P58872 404 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 RASSF7Q02833 373 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 APOBRQ0VD83 1088 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 STK3Q13188 491 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 PICALMQ13492 652 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 WTAPQ15007 396 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 ME3Q16798 604 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 CIAPIN1Q6FI81 312 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 CTR9Q6PD62 1173 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 SYNE3Q6ZMZ3 975 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 MICU3Q86XE3 530 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 OGFOD1Q8N543 542 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 AGBL3Q8NEM8 1001 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 MXD3Q9BW11 206 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 TRIM34Q9BYJ4 488 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 FHDC1Q9C0D6 1143 aaPredicted RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 SAP30BPQ9UHR5 308 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 PAPPA2Q9BXP8 1791 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 TNKSO95271 1327 aa6.99□□□□□ -1.29
HMGB3-202ENST00000419110 WDR33Q9C0J8 1336 aaKnown RBP6.99□□□□□ -1.29
HMGB3-202ENST00000419110 WDR90Q96KV7 1748 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 ATRNL1Q5VV63 1379 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CYP2D7A0A087X1C5 515 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 TSPY2A6NKD2 308 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 DDX11L8A8MPP1 907 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 GOLGA6L22H0YM25 854 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 ZBTB43O43298 467 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 MYO1BO43795 1136 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 PFKFB2O60825 505 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 USP17L8P0C7I0 530 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CYP2D6P10635 497 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 PDIA4P13667 645 aaKnown RBP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 PTMSP20962 102 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 DDIT3P35638 169 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 LIFRP42702 1097 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 METAP2P50579 478 aaKnown RBP eCLIP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 EXOSC10Q01780 885 aaKnown RBP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 TNIP1Q15025 636 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 RAB3GAP1Q15042 981 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 SLC4A8Q2Y0W8 1093 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CFAP100Q494V2 611 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CCDC178Q5BJE1 867 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 C12orf60Q5U649 245 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 APOA5Q6Q788 366 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 C16orf86Q6ZW13 317 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CYB5R4Q7L1T6 521 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 CHST3Q7LGC8 479 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 TTC6Q86TZ1 520 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 SGMS1Q86VZ5 419 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 STK11IPQ8N1F8 1099 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 FAM184AQ8NB25 1140 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 ZNF274Q96GC6 653 aaPredicted RBP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 LLPHQ9BRT6 129 aaKnown RBP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 OSBPL5Q9H0X9 879 aaPredicted RBP6.98□□□□□ -1.29
HMGB3-202ENST00000419110 MKNK2Q9HBH9 465 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 USP40Q9NVE5 1235 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 SWAP70Q9UH65 585 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 LHX6Q9UPM6 363 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 SLC12A7Q9Y666 1083 aa6.98□□□□□ -1.29
HMGB3-202ENST00000419110 PARP14Q460N5 1801 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms