RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 IFNL3Q8IZI9 196 aa22.34■■□□□ 1.17
PTCD3-204ENST00000418628 RLFQ13129 1914 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 VPS53Q5VIR6 699 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 C16orf86Q6ZW13 317 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 DDRGK1Q96HY6 314 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 IL25Q9H293 177 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 SAGE1Q9NXZ1 904 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 SWAP70Q9UH65 585 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 ZBTB21Q9ULJ3 1066 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 AFG3L2Q9Y4W6 797 aa22.33■■□□□ 1.17
PTCD3-204ENST00000418628 IGF2BP3O00425 579 aaKnown RBP eCLIP22.32■■□□□ 1.16
PTCD3-204ENST00000418628 GTF2A2P52657 109 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 INHBEP58166 350 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 MOGSQ13724 837 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 ALX1Q15699 326 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 SLC44A5Q8NCS7 719 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 BRI3BPQ8WY22 251 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 CFHR5Q9BXR6 569 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 PICK1Q9NRD5 415 aa22.32■■□□□ 1.16
PTCD3-204ENST00000418628 RAD50Q92878 1312 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 CA12O43570 354 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 GDF11O95390 407 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 ASNSP08243 561 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 BMP2KLQ5H9B9 411 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 DYNLL2Q96FJ2 89 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 PTPN18Q99952 460 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 TRIM34Q9BYJ4 488 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 TBC1D2Q9BYX2 928 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 DIAPH3Q9NSV4 1193 aa22.31■■□□□ 1.16
PTCD3-204ENST00000418628 CXCL11O14625 94 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 FOXN1O15353 648 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 HSPD1P10809 573 aaKnown RBP22.3■■□□□ 1.16
PTCD3-204ENST00000418628 SNAPC2Q13487 334 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 CCDC84Q86UT8 332 aaPredicted RBP22.3■■□□□ 1.16
PTCD3-204ENST00000418628 IFNL1Q8IU54 200 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 AMOTL1Q8IY63 956 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 NACAP1Q9BZK3 213 aa22.3■■□□□ 1.16
PTCD3-204ENST00000418628 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.3■■□□□ 1.16
PTCD3-204ENST00000418628 A0A0G2JLL6 359 aaPredicted RBP22.29■■□□□ 1.16
PTCD3-204ENST00000418628 CHMLP26374 656 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 GUCY1A2P33402 732 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 TDO2P48775 406 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 CDK8P49336 464 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 CWC27Q6UX04 472 aaKnown RBP22.29■■□□□ 1.16
PTCD3-204ENST00000418628 PRRT2Q7Z6L0 340 aaPredicted RBP22.29■■□□□ 1.16
PTCD3-204ENST00000418628 WDR18Q9BV38 432 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 RNF186Q9NXI6 227 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 ZHX2Q9Y6X8 837 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 ZSWIM8A7E2V4 1837 aa22.29■■□□□ 1.16
PTCD3-204ENST00000418628 CCL15-CCL14A0A0B4J2E2 113 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 USP17L5A8MUK1 530 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 CETPP11597 493 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 CCL15Q16663 113 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 CERKLQ49MI3 558 aaPredicted RBP22.28■■□□□ 1.16
PTCD3-204ENST00000418628 NAPBQ9H115 298 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 A0A0G2JMZ2 1700 aa22.28■■□□□ 1.16
PTCD3-204ENST00000418628 PLIN4Q96Q06 1357 aa22.27■■□□□ 1.16
PTCD3-204ENST00000418628 GH2P01242 217 aa22.27■■□□□ 1.16
PTCD3-204ENST00000418628 HSPA8P11142 646 aaKnown RBP22.27■■□□□ 1.16
PTCD3-204ENST00000418628 MFAP1P55081 439 aaKnown RBP22.27■■□□□ 1.16
PTCD3-204ENST00000418628 ZCCHC17Q9NP64 241 aaKnown RBP22.27■■□□□ 1.16
PTCD3-204ENST00000418628 ANAPC4Q9UJX5 808 aa22.27■■□□□ 1.16
PTCD3-204ENST00000418628 APPP05067 770 aa22.26■■□□□ 1.15
PTCD3-204ENST00000418628 PPARAQ07869 468 aa22.26■■□□□ 1.15
PTCD3-204ENST00000418628 ABCB5Q2M3G0 1257 aa22.26■■□□□ 1.15
PTCD3-204ENST00000418628 ZNF280CQ8ND82 737 aa22.26■■□□□ 1.15
PTCD3-204ENST00000418628 DOCK3Q8IZD9 2030 aa22.26■■□□□ 1.15
PTCD3-204ENST00000418628 COL11A1P12107 1806 aaPredicted RBP22.25■■□□□ 1.15
PTCD3-204ENST00000418628 ALDH1A1P00352 501 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 FGAP02671 866 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 RASA1P20936 1047 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 SH3D19Q5HYK7 790 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 FAM43AQ8N2R8 423 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 CCDC17Q96LX7 622 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 BEGAINQ9BUH8 593 aa22.25■■□□□ 1.15
PTCD3-204ENST00000418628 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.25■■□□□ 1.15
PTCD3-204ENST00000418628 MINDY4BA8MYZ0 360 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 BTBD19C9JJ37 291 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 FGRP09769 529 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 AKR1B1P15121 316 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 CTCFP49711 727 aaPredicted RBP22.24■■□□□ 1.15
PTCD3-204ENST00000418628 NOM1Q5C9Z4 860 aaKnown RBP22.24■■□□□ 1.15
PTCD3-204ENST00000418628 GPAT2Q6NUI2 795 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 DSCC1Q9BVC3 393 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 AS3MTQ9HBK9 375 aa22.24■■□□□ 1.15
PTCD3-204ENST00000418628 TRIM75PA6NK02 468 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 SGSM2O43147 1006 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 TRPA1O75762 1119 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 SPP2Q13103 211 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 TMEM179Q6ZVK1 233 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 ANKRD23Q86SG2 305 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 PROCA1Q8NCQ7 364 aaPredicted RBP22.23■■□□□ 1.15
PTCD3-204ENST00000418628 TACC3Q9Y6A5 838 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 ADGRA2Q96PE1 1338 aa22.23■■□□□ 1.15
PTCD3-204ENST00000418628 BACE1P56817 501 aa22.22■■□□□ 1.15
PTCD3-204ENST00000418628 SEPT2Q15019 361 aa22.22■■□□□ 1.15
PTCD3-204ENST00000418628 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.22■■□□□ 1.15
PTCD3-204ENST00000418628 NBPF3Q9H094 633 aa22.22■■□□□ 1.15
PTCD3-204ENST00000418628 RUFY2Q8WXA3 655 aa22.21■■□□□ 1.15
PTCD3-204ENST00000418628 R3HDMLQ9H3Y0 253 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms