RNA–Protein interactions for RNA: ENST00000417724.1

HLA-DPA1-241, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-241ENST00000417724 COL6A1P12109 1028 aa9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ZKSCAN1P17029 563 aaPredicted RBP9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 RGS2P41220 211 aa9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CACNB2Q08289 660 aaPredicted RBP9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PI16Q6UXB8 463 aa9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CRACR2BQ8N4Y2 399 aaPredicted RBP9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 GTF3C2Q8WUA4 911 aaPredicted RBP9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MEIS3Q99687 375 aa9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 RBPJLQ9UBG7 517 aa9.68□□□□□ -0.86
HLA-DPA1-241ENST00000417724 GLRX3O76003 335 aaKnown RBP9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 UQCRFS1P1P0C7P4 283 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ARID4AP29374 1257 aaPredicted RBP9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ERVK-9P63128 1117 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ERVK-24P63145 666 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MTX1Q13505 466 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 Q3C1V9 767 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 LHX8Q68G74 356 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 GPR142Q7Z601 462 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PLEKHH3Q7Z736 793 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 SH3RF3Q8TEJ3 882 aaPredicted RBP9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 USP6NLQ92738 828 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 LBHD1Q9BQE6 289 aaPredicted RBP9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CWC22Q9HCG8 908 aaKnown RBP9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 TXNRD2Q9NNW7 524 aa9.67□□□□□ -0.86
HLA-DPA1-241ENST00000417724 LAMA3Q16787 3333 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PEX10O60683 326 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CCND3P30281 292 aaPredicted RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PPP4CP60510 307 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CCNA1P78396 465 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MDM2Q00987 491 aaPredicted RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 G3BP1Q13283 466 aaKnown RBP eCLIP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 LRRC26Q2I0M4 334 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MORN1Q5T089 497 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MFSD14CQ5VZR4 134 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 FAM109BQ6ICB4 259 aaPredicted RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 NAA16Q6N069 864 aaPredicted RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ATF7IPQ6VMQ6 1270 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 METTL16Q86W50 562 aaKnown RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 TGFBRAP1Q8WUH2 860 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 EDC3Q96F86 508 aaKnown RBP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CDCA7LQ96GN5 454 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 APBA2Q99767 749 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PAGR1Q9BTK6 254 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PORCNQ9H237 461 aa9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 AATFQ9NY61 560 aaKnown RBP eCLIP9.66□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ZNF316A6NFI3 1004 aaPredicted RBP9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 POTEB2H3BUK9 544 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 IGSF3O75054 1194 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 HLA-DOAP06340 250 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MCAMP43121 646 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 JAG1P78504 1218 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MAP2K5Q13163 448 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 CCL14Q16627 93 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 USP17L2Q6R6M4 530 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 MAPKAPK5Q8IW41 473 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 TRMT2AQ8IZ69 625 aaKnown RBP9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ARHGAP45Q92619 1136 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 EMILIN3Q9NT22 766 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PRKAG2Q9UGJ0 569 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 PALD1Q9ULE6 856 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 ZBTB21Q9ULJ3 1066 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 RABGAP1Q9Y3P9 1069 aa9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.65□□□□□ -0.86
HLA-DPA1-241ENST00000417724 SLC15A5A6NIM6 579 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L15C9J2P7 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L13C9JLJ4 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L11C9JVI0 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L18D6R9N7 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L22D6RA61 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L17D6RBQ6 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L19D6RCP7 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L20D6RJB6 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 MSCO60682 206 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 GDF11O95390 407 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 ATP2B2Q01814 1243 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 USP17L24Q0WX57 530 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 CCDC158Q5M9N0 1113 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 COL25A1Q9BXS0 654 aaPredicted RBP9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 SENP6Q9GZR1 1112 aaPredicted RBP9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 DNAJC18Q9H819 358 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 SNRKQ9NRH2 765 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 IVNS1ABPQ9Y6Y0 642 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 CDK5RAP2Q96SN8 1893 aa9.64□□□□□ -0.87
HLA-DPA1-241ENST00000417724 SIPA1L1O43166 1804 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 FLT1P17948 1338 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 IPO8O15397 1037 aaKnown RBP9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 GNAI2P04899 355 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 CNGA1P29973 690 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 TTC39AQ5SRH9 613 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 WDR78Q5VTH9 848 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 LPAR1Q92633 364 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 FEZ1Q99689 392 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 GPR108Q9NPR9 543 aa9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 DDX20Q9UHI6 824 aaKnown RBP9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 SAP30BPQ9UHR5 308 aaKnown RBP9.63□□□□□ -0.87
HLA-DPA1-241ENST00000417724 FOCADQ5VW36 1801 aa9.62□□□□□ -0.87
HLA-DPA1-241ENST00000417724 DNM1LO00429 736 aa9.62□□□□□ -0.87
HLA-DPA1-241ENST00000417724 GH2P01242 217 aa9.62□□□□□ -0.87
HLA-DPA1-241ENST00000417724 HOXC6P09630 235 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms