RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 TSPY8P0CW00 308 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 SLURP2P0DP57 97 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 SYT1P21579 422 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 FOSBP53539 338 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 SEC23AQ15436 765 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 IFIT1BQ5T764 474 aaKnown RBP14.59□□□□□ -0.07
CHMP3-204ENST00000409727 NUP133Q8WUM0 1156 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 FAM198AQ9UFP1 575 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 TAOK2Q9UL54 1235 aa14.59□□□□□ -0.07
CHMP3-204ENST00000409727 VPS37CA5D8V6 355 aaPredicted RBP14.58□□□□□ -0.08
CHMP3-204ENST00000409727 GOLGA8AA7E2F4 631 aa14.58□□□□□ -0.08
CHMP3-204ENST00000409727 TCP10L2B9ZVM9 353 aa14.58□□□□□ -0.08
CHMP3-204ENST00000409727 RASA1P20936 1047 aa14.58□□□□□ -0.08
CHMP3-204ENST00000409727 FOXD4L6Q3SYB3 417 aaPredicted RBP14.58□□□□□ -0.08
CHMP3-204ENST00000409727 RBM26Q5T8P6 1007 aaKnown RBP14.58□□□□□ -0.08
CHMP3-204ENST00000409727 LARP1BQ659C4 914 aaKnown RBP14.58□□□□□ -0.08
CHMP3-204ENST00000409727 FOXD4L3Q6VB84 417 aaPredicted RBP14.58□□□□□ -0.08
CHMP3-204ENST00000409727 ZNF287Q9HBT7 754 aa14.58□□□□□ -0.08
CHMP3-204ENST00000409727 SRCAPQ6ZRS2 3230 aa14.58□□□□□ -0.08
CHMP3-204ENST00000409727 DDTLA6NHG4 134 aaPredicted RBP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 STX6O43752 255 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 HLA-DOAP06340 250 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 CDC27P30260 824 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 ADD1P35611 737 aaKnown RBP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 ZNF654Q8IZM8 581 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 TMTC2Q8N394 836 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 FAM184AQ8NB25 1140 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 LLPHQ9BRT6 129 aaKnown RBP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 IDI2Q9BXS1 227 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 VEZTQ9HBM0 779 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 ZNF541Q9H0D2 1346 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 FZD9O00144 591 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 DHX16O60231 1041 aaKnown RBP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 BRD1O95696 1058 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 YBX3P16989 372 aaKnown RBP eCLIP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 GMPSP49915 693 aaPredicted RBP14.57□□□□□ -0.08
CHMP3-204ENST00000409727 CHAMP1Q96JM3 812 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 MTA3Q9BTC8 594 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 IL17RBQ9NRM6 502 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 TMOD2Q9NZR1 351 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 SERPINB13Q9UIV8 391 aa14.57□□□□□ -0.08
CHMP3-204ENST00000409727 WDR33Q9C0J8 1336 aaKnown RBP14.56□□□□□ -0.08
CHMP3-204ENST00000409727 FAM196BA6NMK8 535 aa14.56□□□□□ -0.08
CHMP3-204ENST00000409727 SH3BP5LQ7L8J4 393 aa14.56□□□□□ -0.08
CHMP3-204ENST00000409727 CRACR2BQ8N4Y2 399 aaPredicted RBP14.56□□□□□ -0.08
CHMP3-204ENST00000409727 SMARCC2Q8TAQ2 1214 aa14.56□□□□□ -0.08
CHMP3-204ENST00000409727 CHMP4CQ96CF2 233 aa14.56□□□□□ -0.08
CHMP3-204ENST00000409727 MYOZ2Q9NPC6 264 aa14.56□□□□□ -0.08
CHMP3-204ENST00000409727 ZNF70Q9UC06 446 aaPredicted RBP14.56□□□□□ -0.08
CHMP3-204ENST00000409727 LMNB1P20700 586 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 GABPAQ06546 454 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 NBPF9Q3BBW0 867 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 CATIPQ7Z7H3 387 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 MICALL2Q8IY33 904 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 CMTR1Q8N1G2 835 aaKnown RBP14.55□□□□□ -0.08
CHMP3-204ENST00000409727 SCAF8Q9UPN6 1271 aaKnown RBP14.55□□□□□ -0.08
CHMP3-204ENST00000409727 EGFRP00533 1210 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 HMGN5P82970 282 aaKnown RBP14.55□□□□□ -0.08
CHMP3-204ENST00000409727 RTN1Q16799 776 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 CCDC82Q8N4S0 544 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 PHKBQ93100 1093 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 GBP4Q96PP9 640 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 TRIM34Q9BYJ4 488 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 DHX36Q9H2U1 1008 aaKnown RBP14.55□□□□□ -0.08
CHMP3-204ENST00000409727 FAM217BQ9NTX9 383 aaPredicted RBP14.55□□□□□ -0.08
CHMP3-204ENST00000409727 STX8Q9UNK0 236 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 MTMR7Q9Y216 660 aa14.55□□□□□ -0.08
CHMP3-204ENST00000409727 WNT10BO00744 389 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 MYO1BO43795 1136 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 ZSCAN22P10073 491 aaPredicted RBP14.54□□□□□ -0.08
CHMP3-204ENST00000409727 PDCP20941 246 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 SPDYE2Q495Y8 402 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 CDC37L1Q7L3B6 337 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 SAMD7Q7Z3H4 446 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 PI4KBQ9UBF8 816 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 CNOT7Q9UIV1 285 aaKnown RBP14.54□□□□□ -0.08
CHMP3-204ENST00000409727 MTMR6Q9Y217 621 aa14.54□□□□□ -0.08
CHMP3-204ENST00000409727 MPHOSPH10O00566 681 aaKnown RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 ENTPD3O75355 529 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 FDPSP14324 419 aaKnown RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 AKR1B1P15121 316 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 RPS12P25398 132 aaKnown RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 SHMT1P34896 483 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 TBC1D10BQ4KMP7 808 aaPredicted RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 RCSD1Q6JBY9 416 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 CPLX2Q6PUV4 134 aaKnown RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 FANCBQ8NB91 859 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 CSRNP1Q96S65 589 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 KAT14Q9H8E8 782 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 ORC3Q9UBD5 711 aaPredicted RBP14.53□□□□□ -0.08
CHMP3-204ENST00000409727 SWAP70Q9UH65 585 aa14.53□□□□□ -0.08
CHMP3-204ENST00000409727 H3BQV1 296 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 BAG4O95429 457 aaKnown RBP14.52□□□□□ -0.08
CHMP3-204ENST00000409727 MCM4P33991 863 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 IFFO2Q5TF58 517 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 FERMT3Q86UX7 667 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 CLEC10AQ8IUN9 316 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 CEP95Q96GE4 821 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 DNAJC18Q9H819 358 aa14.52□□□□□ -0.08
CHMP3-204ENST00000409727 RNF181Q9P0P0 153 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms