RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 ZNF592Q92610 1267 aa11.34□□□□□ -0.59
MSH2-202ENST00000406134 IRS2Q9Y4H2 1338 aa11.33□□□□□ -0.59
MSH2-202ENST00000406134 CYP2D7A0A087X1C5 515 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 MAP3K12Q12852 859 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 MFSD6Q6ZSS7 791 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 ZNF654Q8IZM8 581 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 CNNM2Q9H8M5 875 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 CCDC87Q9NVE4 849 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 LY75O60449 1722 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 ELF2Q15723 593 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 ZNF827Q17R98 1081 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 SLC51AQ86UW1 340 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 ENAHQ8N8S7 591 aaPredicted RBP11.33□□□□□ -0.6
MSH2-202ENST00000406134 MTA3Q9BTC8 594 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 KRT23Q9C075 422 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 SPATA31A1Q5TZJ5 1347 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 VWA3AA6NCI4 1184 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 KLRK1P26718 216 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 RCAN1P53805 252 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 RTN1Q16799 776 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 NFXL1Q6ZNB6 911 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 SH3RF1Q7Z6J0 888 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 FANCBQ8NB91 859 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 PHF20Q9BVI0 1012 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 UTP14AQ9BVJ6 771 aaKnown RBP11.33□□□□□ -0.6
MSH2-202ENST00000406134 SERTAD1Q9UHV2 236 aa11.33□□□□□ -0.6
MSH2-202ENST00000406134 CD44P16070 742 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 H2AFXP16104 143 aaPredicted RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 TC2NQ8N9U0 490 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 ZNF579Q8NAF0 562 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 SRPRBQ9Y5M8 271 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 WTAPQ15007 396 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 POSTNQ15063 836 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 UTP14CQ5TAP6 766 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 SYT10Q6XYQ8 523 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 CSRNP2Q9H175 543 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 IQSEC3Q9UPP2 1182 aaPredicted RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 TNKSO95271 1327 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 POLR2DO15514 142 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 PLEKHA8P1O95397 391 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 VEGFAP15692 232 aaPredicted RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 DYNLL1P63167 89 aaKnown RBP11.32□□□□□ -0.6
MSH2-202ENST00000406134 DPYDQ12882 1025 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 ERO1AQ96HE7 468 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 TAOK2Q9UL54 1235 aa11.32□□□□□ -0.6
MSH2-202ENST00000406134 DEXIO95424 95 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 SFPQP23246 707 aaKnown RBP eCLIP11.31□□□□□ -0.6
MSH2-202ENST00000406134 GYG1P46976 350 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 UBASH3AP57075 661 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 CCDC82Q8N4S0 544 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 LOC102724428A0A0B4J2F2 783 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 EXOC5O00471 708 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 GNAT2P19087 354 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 SIK1P57059 783 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 TROAPQ12815 778 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 IL17AQ16552 155 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 TRMT44Q8IYL2 757 aaKnown RBP11.31□□□□□ -0.6
MSH2-202ENST00000406134 CNNM3Q8NE01 707 aa11.31□□□□□ -0.6
MSH2-202ENST00000406134 PRDM1O75626 825 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 CASP1P29466 404 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 PBX1P40424 430 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 CUL4BQ13620 913 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 HSP90AA4PQ58FG1 418 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 RRP12Q5JTH9 1297 aaKnown RBP11.3□□□□□ -0.6
MSH2-202ENST00000406134 FEZ1Q99689 392 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.3□□□□□ -0.6
MSH2-202ENST00000406134 PARP3Q9Y6F1 533 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 CNTNAP5Q8WYK1 1306 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 hCG_1642624A0A1W2PR95 340 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 JMYQ8N9B5 988 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 ACSBG1Q96GR2 724 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 EPSTI1Q96J88 318 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 MTRQ99707 1265 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 CGNQ9P2M7 1197 aaKnown RBP11.3□□□□□ -0.6
MSH2-202ENST00000406134 PHLPP2Q6ZVD8 1323 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 A0A0U1RQJ8 604 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 TDO2P48775 406 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 ERFEQ4G0M1 354 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 SMIM5Q71RC9 77 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 ATRIPQ8WXE1 791 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 KIFC2Q96AC6 838 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 MPHOSPH8Q99549 860 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 RNF26Q9BY78 433 aaPredicted RBP11.3□□□□□ -0.6
MSH2-202ENST00000406134 SAMSN1Q9NSI8 373 aaKnown RBP11.3□□□□□ -0.6
MSH2-202ENST00000406134 OGFRQ9NZT2 677 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 VPS54Q9P1Q0 977 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 NHSQ6T4R5 1651 aa11.3□□□□□ -0.6
MSH2-202ENST00000406134 SLU7O95391 586 aaKnown RBP11.29□□□□□ -0.6
MSH2-202ENST00000406134 ATP6V1AP38606 617 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 NR1I3Q14994 352 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 CCDC152Q4G0S7 254 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 RILPL1Q5EBL4 403 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 TOGARAM2Q6ZUX3 1019 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 GOLGB1Q14789 3259 aaKnown RBP11.29□□□□□ -0.6
MSH2-202ENST00000406134 PARP10Q53GL7 1025 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 CTR9Q6PD62 1173 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 ENOX1Q8TC92 643 aaKnown RBP11.29□□□□□ -0.6
MSH2-202ENST00000406134 LTBP1Q14766 1721 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 KCNQ2O43526 872 aa11.29□□□□□ -0.6
MSH2-202ENST00000406134 MYO1BO43795 1136 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms