RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ADAMTSL1Q8N6G6 1762 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 MPHOSPH10O00566 681 aaKnown RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 WNT10BO00744 389 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 EGFRP00533 1210 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 ADD1P35611 737 aaKnown RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 LIFRP42702 1097 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 NUCB2P80303 420 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 C16orf86Q6ZW13 317 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 FBXL16Q8N461 479 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 CCDC82Q8N4S0 544 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 FAM184AQ8NB25 1140 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 IDI2Q9BXS1 227 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 ZNF70Q9UC06 446 aaPredicted RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 HPS5Q9UPZ3 1129 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 LAMA4Q16363 1823 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 PTPDC1A2A3K4 754 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 VPS37CA5D8V6 355 aaPredicted RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 GOLGA8AA7E2F4 631 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 DHX16O60231 1041 aaKnown RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 RASA1P20936 1047 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 LARP1BQ659C4 914 aaKnown RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 CATIPQ7Z7H3 387 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 SGMS1Q86VZ5 419 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 TMTC2Q8N394 836 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 TNPO1Q92973 898 aaKnown RBP4.34□□□□□ -1.71
RTN4-208ENST00000404909 CSRNP1Q96S65 589 aa4.34□□□□□ -1.71
RTN4-208ENST00000404909 CTDNEP1O95476 244 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 SYT1P21579 422 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 RPS12P25398 132 aaKnown RBP4.34□□□□□ -1.72
RTN4-208ENST00000404909 EVCP57679 992 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 ATP2B2Q01814 1243 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 RAB3GAP1Q15042 981 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 C9orf131Q5VYM1 1079 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 SH3BP5LQ7L8J4 393 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 ZNF654Q8IZM8 581 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 CMTR1Q8N1G2 835 aaKnown RBP4.34□□□□□ -1.72
RTN4-208ENST00000404909 TMEM39BQ9GZU3 492 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 DHX36Q9H2U1 1008 aaKnown RBP4.34□□□□□ -1.72
RTN4-208ENST00000404909 PI4KBQ9UBF8 816 aa4.34□□□□□ -1.72
RTN4-208ENST00000404909 ROBO3Q96MS0 1386 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 H7C1D1 291 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 STX6O43752 255 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 DDNO94850 711 aaPredicted RBP4.33□□□□□ -1.72
RTN4-208ENST00000404909 CDC27P30260 824 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 SEC23AQ15436 765 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 SPDYE2Q495Y8 402 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 NSUN7Q8NE18 718 aaKnown RBP4.33□□□□□ -1.72
RTN4-208ENST00000404909 PHKBQ93100 1093 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 KAT14Q9H8E8 782 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 IL17RBQ9NRM6 502 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 ASTN2O75129 1339 aaPredicted RBP4.33□□□□□ -1.72
RTN4-208ENST00000404909 H3BQV1 296 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 RAD21O60216 631 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 ENTPD3O75355 529 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 AKR1B1P15121 316 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 GABPAQ06546 454 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 NFKBIBQ15653 356 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 RTN1Q16799 776 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 IFFO2Q5TF58 517 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 CPLX2Q6PUV4 134 aaKnown RBP4.33□□□□□ -1.72
RTN4-208ENST00000404909 MIGA2Q7L4E1 593 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 CLEC10AQ8IUN9 316 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 CDAN1Q8IWY9 1227 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 FANCBQ8NB91 859 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 DPF2Q92785 391 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 CEP95Q96GE4 821 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 CHAMP1Q96JM3 812 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 ZDHHC9Q9Y397 364 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 TIAM2Q8IVF5 1701 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 NAV1Q8NEY1 1877 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 GDF11O95390 407 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 PDCP20941 246 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 SHMT1P34896 483 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 EPS15P42566 896 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 GUCY1B3Q02153 619 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 KIF4BQ2VIQ3 1234 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 FERMT3Q86UX7 667 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 GPC2Q8N158 579 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 LLPHQ9BRT6 129 aaKnown RBP4.33□□□□□ -1.72
RTN4-208ENST00000404909 MTA3Q9BTC8 594 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 SWAP70Q9UH65 585 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 MYH1P12882 1939 aa4.33□□□□□ -1.72
RTN4-208ENST00000404909 WDR33Q9C0J8 1336 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 CDKL5O76039 1030 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 ZNF280AP59817 542 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 HMGN5P82970 282 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 SHROOM1Q2M3G4 852 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 CERKLQ49MI3 558 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 RCSD1Q6JBY9 416 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 DGKHQ86XP1 1220 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 MTMR14Q8NCE2 650 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 PNMA1Q8ND90 353 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 NEDD1Q8NHV4 660 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 PIBF1Q8WXW3 757 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 SLC26A6Q9BXS9 759 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 DNAJC18Q9H819 358 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.32□□□□□ -1.72
RTN4-208ENST00000404909 ORC3Q9UBD5 711 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 ISY1Q9ULR0 285 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 KIF3AQ9Y496 699 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms