RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LRRC23Q53EV4 343 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 CEP85LQ5SZL2 805 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 FCHSD1Q86WN1 690 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 XPO4Q9C0E2 1151 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 STK24Q9Y6E0 443 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 BLMP54132 1417 aaPredicted RBP11.4□□□□□ -0.59
LIMCH1-203ENST00000396595 NCBP1Q09161 790 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-203ENST00000396595 SND1Q7KZF4 910 aaKnown RBP eCLIP11.4□□□□□ -0.59
LIMCH1-203ENST00000396595 CEP104O60308 925 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 PLS1Q14651 629 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 KRT25Q7Z3Z0 450 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 MAK16Q9BXY0 300 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 STX10O60499 249 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 TMCO4Q5TGY1 634 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 ADALQ6DHV7 355 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 FAM212AQ96EL1 285 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 XAGE2Q96GT9 111 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 SLF1Q9BQI6 1058 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 PPFIA4O75335 1185 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 SYCE1Q8N0S2 351 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 FNBP1Q96RU3 617 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 PNMA6EA0A0J9YXQ4 647 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 FLOT1O75955 427 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 LIN9Q5TKA1 542 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 TMEM87AQ8NBN3 555 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 NSFL1CQ9UNZ2 370 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 SHANK2Q9UPX8 1470 aa11.39□□□□□ -0.59
LIMCH1-203ENST00000396595 JAK2O60674 1132 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 KRT5P13647 590 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 RPS6KA1Q15418 735 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 DSCC1Q9BVC3 393 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 ARMT1Q9H993 441 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 GCP02774 474 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 MYCNP04198 464 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 RNASE9P60153 205 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 BIRC3Q13489 604 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 NONOQ15233 471 aaKnown RBP eCLIP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 VSIG1Q86XK7 387 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 PLCB1Q9NQ66 1216 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 FAF1Q9UNN5 650 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 DPH6Q7L8W6 267 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 TEX11Q8IYF3 940 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 PDCD7Q8N8D1 485 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 NELFBQ8WX92 580 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 SEPT8Q92599 483 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 KIAA1468Q9P260 1216 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 IBTKQ9P2D0 1353 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 CHMP2AO43633 222 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 MYSM1Q5VVJ2 828 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF790Q6PG37 636 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 PHLDB2Q86SQ0 1253 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 FAM204AQ9H8W3 233 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 LRWD1Q9UFC0 647 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 PCDH11XQ9BZA7 1347 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 PCDH11YQ9BZA8 1340 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 CCNT1O60563 726 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 ITGA6P23229 1130 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 KLHL30Q0D2K2 578 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 UAP1Q16222 522 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 DDB1Q16531 1140 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 ARHGAP24Q8N264 748 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 AGTPBP1Q9UPW5 1226 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 ZNF518AQ6AHZ1 1483 aa11.38□□□□□ -0.59
LIMCH1-203ENST00000396595 SBNO1A3KN83 1393 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 TXKP42681 527 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SMTNP53814 917 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 PARP10Q53GL7 1025 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 BEND3Q5T5X7 828 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SAR1BQ9Y6B6 198 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 EDC4Q6P2E9 1401 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 BACH1O14867 736 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 RNF8O76064 485 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 CCDC92Q53HC0 331 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 AKNAD1Q5T1N1 836 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 KLHL7Q8IXQ5 586 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ACSBG1Q96GR2 724 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SH2D4AQ9H788 454 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ASIC3Q9UHC3 531 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ZSCAN26Q16670 478 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ERCC6LQ2NKX8 1250 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SMC1BQ8NDV3 1235 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 LZTS2Q9BRK4 669 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ZBTB21Q9ULJ3 1066 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 USP19O94966 1318 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SH3TC1Q8TE82 1336 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 YTHDC2Q9H6S0 1430 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 SNX29Q8TEQ0 813 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 FAM89AQ96GI7 184 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 EYA3Q99504 573 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 TRIM31Q9BZY9 425 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 CTTNBP2NLQ9P2B4 639 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 EXOC7Q9UPT5 735 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 KIAA0232Q92628 1395 aa11.37□□□□□ -0.59
LIMCH1-203ENST00000396595 ATP5JP18859 108 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 ETF1P62495 437 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 ME3Q16798 604 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 LONRF3Q496Y0 759 aa11.36□□□□□ -0.59
LIMCH1-203ENST00000396595 HERC4Q5GLZ8 1057 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms