RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 OLFM4Q6UX06 510 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 WDR24Q96S15 920 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 TRIM29Q14134 588 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 PARP3Q9Y6F1 533 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 TOGARAM2Q6ZUX3 1019 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 NBPF5PQ86XG9 351 aaPredicted RBP18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 SLIT2O94813 1529 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 NR5A1Q13285 461 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 AKNAD1Q5T1N1 836 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 USP49Q70CQ1 688 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 DESI2Q9BSY9 194 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 MAN1B1Q9UKM7 699 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 PHLPP2Q6ZVD8 1323 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 NHSL1Q5SYE7 1610 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 POLR2DO15514 142 aaKnown RBP18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 PNMA6AP0CW24 399 aaPredicted RBP18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 SMARCC1Q92922 1105 aaPredicted RBP18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 PPP2R2CQ9Y2T4 447 aa18.62■□□□□ 0.57
NKX3-1-201ENST00000380871 CUTAO60888 179 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 MDM2Q00987 491 aaPredicted RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 UBXN4Q92575 508 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 MED15Q96RN5 788 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 MTMR7Q9Y216 660 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 CBFA2T2O43439 604 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 NOSTRINQ8IVI9 506 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 KRI1Q8N9T8 703 aaKnown RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 MNS1Q8NEH6 495 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 ZNF512BQ96KM6 892 aaPredicted RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 SERTAD1Q9UHV2 236 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 THRAP3Q9Y2W1 955 aaKnown RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 NFE2L3Q9Y4A8 694 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 FAM237AA0A1B0GTK4 181 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 ERICH2A1L162 156 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 EVX2Q03828 476 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 DIS3L2Q8IYB7 885 aaKnown RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 PCDHB6Q9Y5E3 794 aa18.61■□□□□ 0.57
NKX3-1-201ENST00000380871 LRP6O75581 1613 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 MAGEB6P1A0A0J9YX57 407 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 TADA3O75528 432 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 CAVIN4Q5BKX8 364 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 ZPR1O75312 459 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 PLA2G4AP47712 749 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 SSRP1Q08945 709 aaKnown RBP18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 WTAPQ15007 396 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 OXER1Q8TDS5 423 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 SETDB2Q96T68 719 aa18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 SAMSN1Q9NSI8 373 aaKnown RBP18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 GNL3LQ9NVN8 582 aaKnown RBP18.6■□□□□ 0.57
NKX3-1-201ENST00000380871 MTF1Q14872 753 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 POSTNQ15063 836 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 ZBTB9Q96C00 473 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 UBAC1Q9BSL1 405 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 MINPP1Q9UNW1 487 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 NUP98P52948 1817 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 TMEM87BQ96K49 555 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 BAG1Q99933 345 aaPredicted RBP18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 IRX2Q9BZI1 471 aaPredicted RBP18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 ATRNO75882 1429 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 A0A0U1RQJ8 604 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 CASP1P29466 404 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 GNG11P61952 73 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 BMS1Q14692 1282 aaKnown RBP18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 TC2NQ8N9U0 490 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 ATRIPQ8WXE1 791 aa18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 FBXO2Q9UK22 296 aaPredicted RBP18.59■□□□□ 0.57
NKX3-1-201ENST00000380871 FAM205CA6NFA0 338 aa18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 TOM1O60784 492 aa18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 KARSQ15046 597 aaKnown RBP18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 SGMS1Q86VZ5 419 aa18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 AMIGO3Q86WK7 504 aa18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 GPR101Q96P66 508 aaPredicted RBP18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 ABCC12Q96J65 1359 aa18.58■□□□□ 0.57
NKX3-1-201ENST00000380871 MMP1P03956 469 aa18.58■□□□□ 0.56
NKX3-1-201ENST00000380871 CDK11BP21127 795 aaKnown RBP18.58■□□□□ 0.56
NKX3-1-201ENST00000380871 COL14A1Q05707 1796 aaKnown RBP18.58■□□□□ 0.56
NKX3-1-201ENST00000380871 FMNL1O95466 1100 aaPredicted RBP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 PPARAQ07869 468 aa18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 ARHGAP6O43182 974 aa18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 TBX2Q13207 712 aaPredicted RBP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 SART3Q15020 963 aaKnown RBP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 RTN1Q16799 776 aa18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 NLRP3Q96P20 1036 aa18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 AATFQ9NY61 560 aaKnown RBP eCLIP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 CCNL1Q9UK58 526 aaPredicted RBP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 POLR3GO15318 223 aaPredicted RBP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 ZRANB2O95218 330 aaKnown RBP eCLIP18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 DOT1LQ8TEK3 1739 aa18.57■□□□□ 0.56
NKX3-1-201ENST00000380871 RPS8P62241 208 aaKnown RBP18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 FAM84BQ96KN1 310 aaPredicted RBP18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 NOL10Q9BSC4 688 aaKnown RBP18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 ZNF18P17022 549 aa18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 AK7Q96M32 723 aa18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 KRT23Q9C075 422 aa18.56■□□□□ 0.56
NKX3-1-201ENST00000380871 CCP110O43303 1012 aa18.55■□□□□ 0.56
NKX3-1-201ENST00000380871 COBLO75128 1261 aa18.55■□□□□ 0.56
NKX3-1-201ENST00000380871 SASH3O75995 380 aa18.55■□□□□ 0.56
NKX3-1-201ENST00000380871 TMCO3Q6UWJ1 677 aa18.55■□□□□ 0.56
NKX3-1-201ENST00000380871 SHISA4Q96DD7 197 aa18.55■□□□□ 0.56
NKX3-1-201ENST00000380871 ZSWIM4Q9H7M6 989 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms