RNA–Protein interactions for RNA: ENST00000369747.7

UBE3D-203, Transcript of ubiquitin protein ligase E3D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3D, Length 1,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-203ENST00000369747 CHST3Q7LGC8 479 aa20.26■□□□□ 0.83
UBE3D-203ENST00000369747 FBXL16Q8N461 479 aa20.26■□□□□ 0.83
UBE3D-203ENST00000369747 DYNLL2Q96FJ2 89 aa20.26■□□□□ 0.83
UBE3D-203ENST00000369747 L3MBTL3Q96JM7 780 aaPredicted RBP20.26■□□□□ 0.83
UBE3D-203ENST00000369747 TMOD2Q9NZR1 351 aa20.26■□□□□ 0.83
UBE3D-203ENST00000369747 DDTLA6NHG4 134 aaPredicted RBP20.25■□□□□ 0.83
UBE3D-203ENST00000369747 DNM1Q05193 864 aaKnown RBP20.25■□□□□ 0.83
UBE3D-203ENST00000369747 AKNAD1Q5T1N1 836 aa20.25■□□□□ 0.83
UBE3D-203ENST00000369747 SH3BP5LQ7L8J4 393 aa20.25■□□□□ 0.83
UBE3D-203ENST00000369747 CNTNAP1P78357 1384 aa20.25■□□□□ 0.83
UBE3D-203ENST00000369747 MB21D2Q8IYB1 491 aaPredicted RBP20.25■□□□□ 0.83
UBE3D-203ENST00000369747 SMARCC2Q8TAQ2 1214 aa20.25■□□□□ 0.83
UBE3D-203ENST00000369747 NPM3O75607 178 aaKnown RBP20.24■□□□□ 0.83
UBE3D-203ENST00000369747 PRDM1O75626 825 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 SLURP2P0DP57 97 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 MFSD6Q6ZSS7 791 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 AMOTL1Q8IY63 956 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 STAG1Q8WVM7 1258 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 LLPHQ9BRT6 129 aaKnown RBP20.24■□□□□ 0.83
UBE3D-203ENST00000369747 HACL1Q9UJ83 578 aa20.24■□□□□ 0.83
UBE3D-203ENST00000369747 ENTPD3O75355 529 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 ZSCAN29Q8IWY8 852 aaPredicted RBP20.23■□□□□ 0.83
UBE3D-203ENST00000369747 SLC44A5Q8NCS7 719 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 ADARB2Q9NS39 739 aaKnown RBP20.23■□□□□ 0.83
UBE3D-203ENST00000369747 B4E1Z4 1266 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 FIBPO43427 364 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 CTDNEP1O95476 244 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 EVCP57679 992 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 RRP12Q5JTH9 1297 aaKnown RBP20.23■□□□□ 0.83
UBE3D-203ENST00000369747 FKBP1CQ5VVH2 108 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 CDAN1Q8IWY9 1227 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 NSUN7Q8NE18 718 aaKnown RBP20.23■□□□□ 0.83
UBE3D-203ENST00000369747 ZNF274Q96GC6 653 aaPredicted RBP20.23■□□□□ 0.83
UBE3D-203ENST00000369747 TMEM39BQ9GZU3 492 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 TOMM22Q9NS69 142 aa20.23■□□□□ 0.83
UBE3D-203ENST00000369747 POTECB2RU33 542 aa20.22■□□□□ 0.83
UBE3D-203ENST00000369747 PDIA3P30101 505 aaKnown RBP20.22■□□□□ 0.83
UBE3D-203ENST00000369747 ANGEL2Q5VTE6 544 aaKnown RBP20.22■□□□□ 0.83
UBE3D-203ENST00000369747 FERMT3Q86UX7 667 aa20.22■□□□□ 0.83
UBE3D-203ENST00000369747 NCOA7Q8NI08 942 aa20.22■□□□□ 0.83
UBE3D-203ENST00000369747 ROBO3Q96MS0 1386 aa20.22■□□□□ 0.83
UBE3D-203ENST00000369747 MYH15Q9Y2K3 1946 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 ANTXR2P58335 489 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 TTC6Q86TZ1 520 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 GPHNQ9NQX3 736 aaPredicted RBP20.21■□□□□ 0.83
UBE3D-203ENST00000369747 SYCE3A1L190 88 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 PRC1O43663 620 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 FGRP09769 529 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 MCM5P33992 734 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 UBE2HP62256 183 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 TRDNQ13061 729 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 LRSAM1Q6UWE0 723 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 RALYLQ86SE5 291 aaKnown RBP20.21■□□□□ 0.83
UBE3D-203ENST00000369747 FAM151AQ8WW52 585 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 DDX11Q96FC9 970 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 DHX36Q9H2U1 1008 aaKnown RBP20.21■□□□□ 0.83
UBE3D-203ENST00000369747 RNF41Q9H4P4 317 aaPredicted RBP20.21■□□□□ 0.83
UBE3D-203ENST00000369747 GGA3Q9NZ52 723 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.21■□□□□ 0.83
UBE3D-203ENST00000369747 ATRNL1Q5VV63 1379 aa20.21■□□□□ 0.83
UBE3D-203ENST00000369747 SIPA1L1O43166 1804 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 KDM4AO75164 1064 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 SLC3A2P08195 630 aaKnown RBP20.2■□□□□ 0.82
UBE3D-203ENST00000369747 EPHX2P34913 555 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 CCT2P78371 535 aaKnown RBP20.2■□□□□ 0.82
UBE3D-203ENST00000369747 RASA3Q14644 834 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 FAM83AQ86UY5 434 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 CSRNP1Q96S65 589 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 ZSWIM5Q9P217 1185 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 SERPINB13Q9UIV8 391 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 WDR19Q8NEZ3 1342 aa20.2■□□□□ 0.82
UBE3D-203ENST00000369747 FAM196BA6NMK8 535 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 GABPAQ06546 454 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 PDE4BQ07343 736 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 CSPP1Q1MSJ5 1256 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 C16orf86Q6ZW13 317 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 CYB5R4Q7L1T6 521 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 SYAP1Q96A49 352 aaPredicted RBP20.19■□□□□ 0.82
UBE3D-203ENST00000369747 CNNM2Q9H8M5 875 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 NCOA5Q9HCD5 579 aaKnown RBP20.19■□□□□ 0.82
UBE3D-203ENST00000369747 PTPDC1A2A3K4 754 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 HLA-DOAP06340 250 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 CDK8P49336 464 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 FAM173BQ6P4H8 233 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 KRT23Q9C075 422 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 DEFB129Q9H1M3 183 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 PI4KBQ9UBF8 816 aa20.19■□□□□ 0.82
UBE3D-203ENST00000369747 POLR2AP24928 1970 aaKnown RBP20.19■□□□□ 0.82
UBE3D-203ENST00000369747 SCN4AP35499 1836 aa20.18■□□□□ 0.82
UBE3D-203ENST00000369747 RANBP6O60518 1105 aaKnown RBP20.18■□□□□ 0.82
UBE3D-203ENST00000369747 TAF1DQ9H5J8 278 aaPredicted RBP20.18■□□□□ 0.82
UBE3D-203ENST00000369747 DNAJC18Q9H819 358 aa20.18■□□□□ 0.82
UBE3D-203ENST00000369747 PGAP2Q9UHJ9 254 aa20.18■□□□□ 0.82
UBE3D-203ENST00000369747 WDR90Q96KV7 1748 aa20.18■□□□□ 0.82
UBE3D-203ENST00000369747 COL2A1P02458 1487 aaPredicted RBP20.18■□□□□ 0.82
UBE3D-203ENST00000369747 ORC4O43929 436 aa20.17■□□□□ 0.82
UBE3D-203ENST00000369747 KRT85P78386 507 aa20.17■□□□□ 0.82
UBE3D-203ENST00000369747 HMGN5P82970 282 aaKnown RBP20.17■□□□□ 0.82
UBE3D-203ENST00000369747 TNFAIP1Q13829 316 aa20.17■□□□□ 0.82
UBE3D-203ENST00000369747 FAM184AQ8NB25 1140 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms