RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 NR2E3Q9Y5X4 410 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 IFRD1O00458 451 aaPredicted RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CTIFO43310 598 aaKnown RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 TPM3P06753 285 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 SCNN1DP51172 638 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CHAF1AQ13111 956 aaPredicted RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 MAPRE1Q15691 268 aaKnown RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 LRCH2Q5VUJ6 765 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 SMYD5Q6GMV2 418 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CYP4F22Q6NT55 531 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 PRPF40BQ6NWY9 871 aaKnown RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CENPQQ7L2Z9 268 aaPredicted RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CCDC89Q8N998 374 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 ANKLE1Q8NAG6 615 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 FLCNQ8NFG4 579 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 OXER1Q8TDS5 423 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 TMEM87BQ96K49 555 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 BCL2L12Q9HB09 334 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 CLIC5Q9NZA1 410 aa5.89□□□□□ -1.47
UBE3D-202ENST00000369746 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.89□□□□□ -1.47
UBE3D-202ENST00000369746 LAMB2P55268 1798 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 MANSC4A6NHS7 340 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 BPNT1O95861 308 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 FOSL1P15407 271 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 XBP1P17861 261 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 CHRNA5P30532 468 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 Q3C1V9 767 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 LDLRAD1Q5T700 205 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 KRT77Q7Z794 578 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 SNX32Q86XE0 403 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 NME9Q86XW9 330 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 ANKRD13BQ86YJ7 626 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 RUNDC1Q96C34 613 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 SLC4A9Q96Q91 983 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 CAPN10Q9HC96 672 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 GBA2Q9HCG7 927 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 FAM53CQ9NYF3 392 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 ZNF541Q9H0D2 1346 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 GPR37O15354 613 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 STARD3NLO95772 234 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 ZBTB48P10074 688 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 NASPP49321 788 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 RABEP1Q15276 862 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 NFE2L2Q16236 605 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 CIAPIN1Q6FI81 312 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 PRR5LQ6MZQ0 368 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 SAMD7Q7Z3H4 446 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 JARID2Q92833 1246 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 ERCC4Q92889 916 aaPredicted RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 DIAPH3Q9NSV4 1193 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 POLR3EQ9NVU0 708 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 DDX41Q9UJV9 622 aaKnown RBP5.88□□□□□ -1.47
UBE3D-202ENST00000369746 ITM2BQ9Y287 266 aa5.88□□□□□ -1.47
UBE3D-202ENST00000369746 GPR25O00155 361 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 RGS20O76081 388 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 CCDC175P0C221 793 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 TRPC1P48995 793 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ZNF131P52739 623 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 KIAA2012Q0VF49 1180 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 NFX1Q12986 1120 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 COL19A1Q14993 1142 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 RASAL3Q86YV0 1011 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ELOA2Q8IYF1 753 aaPredicted RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 CENPTQ96BT3 561 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 NELL2Q99435 816 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 NUCKS1Q9H1E3 243 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 SLKQ9H2G2 1235 aaPredicted RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 RSPH14Q9UHP6 348 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ASAP1Q9ULH1 1129 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 PABPN1LA6NDY0 278 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 TBX3O15119 743 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ZNF445P59923 1031 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 PPP4R4Q6NUP7 873 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 CLEC17AQ6ZS10 378 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 SYNE4Q8N205 404 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 NEK9Q8TD19 979 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ACBD3Q9H3P7 528 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 GINM1Q9NU53 330 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 MRGBPQ9NV56 204 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 TRMT1Q9NXH9 659 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ZNRF3Q9ULT6 936 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 CLEC11AQ9Y240 323 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 PTPN22Q9Y2R2 807 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 CHMP3Q9Y3E7 222 aa5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ROCK2O75116 1388 aaKnown RBP5.87□□□□□ -1.47
UBE3D-202ENST00000369746 ANKRD18BA2A2Z9 1011 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 ERVV-1B6SEH8 477 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 TNNT1P13805 278 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 VAMP1P23763 118 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 IRX1P78414 480 aaPredicted RBP5.86□□□□□ -1.47
UBE3D-202ENST00000369746 SARNPP82979 210 aaKnown RBP5.86□□□□□ -1.47
UBE3D-202ENST00000369746 KIF23Q02241 960 aaPredicted RBP5.86□□□□□ -1.47
UBE3D-202ENST00000369746 SPECC1Q5M775 1068 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 FBXO33Q7Z6M2 555 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.86□□□□□ -1.47
UBE3D-202ENST00000369746 TBC1D20Q96BZ9 403 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 FAM161BQ96MY7 647 aa5.86□□□□□ -1.47
UBE3D-202ENST00000369746 CHCHD3Q9NX63 227 aaKnown RBP5.86□□□□□ -1.47
UBE3D-202ENST00000369746 SUFUQ9UMX1 484 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms