RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 PPFIBP2Q8ND30 876 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 BCAS4Q8TDM0 211 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 ALDH3A1P30838 453 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 LONRF2Q1L5Z9 754 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 FAM89AQ96GI7 184 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 PPANQ9NQ55 473 aaKnown RBP17.76■□□□□ 0.43
COL17A1-202ENST00000369733 RTEL1Q9NZ71 1219 aa17.76■□□□□ 0.43
COL17A1-202ENST00000369733 DDX41Q9UJV9 622 aaKnown RBP17.76■□□□□ 0.43
COL17A1-202ENST00000369733 PCK1P35558 622 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 CLCN6P51797 869 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 PLCB3Q01970 1234 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 CDC23Q9UJX2 597 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 DPCR1Q3MIW9 517 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 NOSTRINQ8IVI9 506 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 PPFIA4O75335 1185 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 GOLGA8FQ08AF8 430 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 GOLGA8DPQ0D2H9 430 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 MTMR3Q13615 1198 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 TRIML1Q8N9V2 468 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 CCNT1O60563 726 aaKnown RBP17.75■□□□□ 0.43
COL17A1-202ENST00000369733 ITGA6P23229 1130 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 NCBP1Q09161 790 aaKnown RBP17.75■□□□□ 0.43
COL17A1-202ENST00000369733 FBXO38Q6PIJ6 1188 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 TRIM58Q8NG06 486 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 CLIC6Q96NY7 704 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 DNAI2Q9GZS0 605 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 PLEKHA4Q9H4M7 779 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 FAM204AQ9H8W3 233 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 ZAP70P43403 619 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 MORC3Q14149 939 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 DZIP3Q86Y13 1208 aaKnown RBP17.75■□□□□ 0.43
COL17A1-202ENST00000369733 FMNL3Q8IVF7 1028 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 TMEM87AQ8NBN3 555 aa17.75■□□□□ 0.43
COL17A1-202ENST00000369733 NIP7Q9Y221 180 aaKnown RBP eCLIP17.75■□□□□ 0.43
COL17A1-202ENST00000369733 LMNTD2Q8IXW0 634 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 SMARCC2Q8TAQ2 1214 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 PDLIM2Q96JY6 352 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 A0A087WWV3 80 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 EPB41P11171 864 aaKnown RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 GUCY2FP51841 1108 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 GCP02774 474 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 RPS6KA1Q15418 735 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 CPSF2Q9P2I0 782 aaKnown RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 PARP1P09874 1014 aaKnown RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 PDIA3P30101 505 aaKnown RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 NBPF6Q5VWK0 638 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 NBPF5PQ86XG9 351 aaPredicted RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 NBPF4Q96M43 638 aa17.74■□□□□ 0.43
COL17A1-202ENST00000369733 MYCBPQ99417 103 aaPredicted RBP17.74■□□□□ 0.43
COL17A1-202ENST00000369733 PPP2R5BQ15173 497 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 STMN2Q93045 179 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 FAM207AQ9NSI2 230 aaPredicted RBP17.73■□□□□ 0.43
COL17A1-202ENST00000369733 VPS54Q9P1Q0 977 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 ATP1A2P50993 1020 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 PUM3Q15397 648 aaKnown RBP17.73■□□□□ 0.43
COL17A1-202ENST00000369733 DAAM2Q86T65 1068 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 C2CD5Q86YS7 1000 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 HAUS4Q9H6D7 363 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 HSPD1P10809 573 aaKnown RBP17.73■□□□□ 0.43
COL17A1-202ENST00000369733 TNFAIP3P21580 790 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 GBP1P32455 592 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 TSNARE1Q96NA8 513 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 SYNCQ9H7C4 482 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 BAIAP2L1Q9UHR4 511 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 PICALMQ13492 652 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 RRAGAQ7L523 313 aa17.73■□□□□ 0.43
COL17A1-202ENST00000369733 CCDC84Q86UT8 332 aaPredicted RBP17.73■□□□□ 0.43
COL17A1-202ENST00000369733 KDRP35968 1356 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 PRDM1O75626 825 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 LARGE1O95461 756 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 ERCC3P19447 782 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 TERF2Q15554 542 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 KRT71Q3SY84 523 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SPATA1Q5VX52 437 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SPATS2Q86XZ4 545 aaKnown RBP17.72■□□□□ 0.43
COL17A1-202ENST00000369733 CCDC63Q8NA47 563 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SPDYE3A6NKU9 549 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 NEURL1BA8MQ27 555 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 IKBKBO14920 756 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 TAF5LO75529 589 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 TAOK1Q7L7X3 1001 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 CROCCP2Q86T23 111 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 ZMYM6O95789 1325 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 ZNF532Q9HCE3 1301 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 TXKP42681 527 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SFMBT2Q5VUG0 894 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 HYOU1Q9Y4L1 999 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL17A1-202ENST00000369733 hCG_1642624A0A1W2PR95 340 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SPOPO43791 374 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 CCT5P48643 541 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 KLHL30Q0D2K2 578 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SF3A3Q12874 501 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL17A1-202ENST00000369733 CEP85LQ5SZL2 805 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SREK1Q8WXA9 508 aaKnown RBP17.72■□□□□ 0.43
COL17A1-202ENST00000369733 SIRT1Q96EB6 747 aa17.72■□□□□ 0.43
COL17A1-202ENST00000369733 HGSO14964 777 aaPredicted RBP17.71■□□□□ 0.43
COL17A1-202ENST00000369733 ADD1P35611 737 aaKnown RBP17.71■□□□□ 0.43
COL17A1-202ENST00000369733 IQCDQ96DY2 449 aa17.71■□□□□ 0.43
COL17A1-202ENST00000369733 HAUS7Q99871 368 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms