RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 MAST2Q6P0Q8 1798 aa10.7□□□□□ -0.7
HMGB1P39-201ENST00000366304 FANCIQ9NVI1 1328 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 ENTPD3O75355 529 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 GCLCP48506 637 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 JAG1P78504 1218 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 SPP2Q13103 211 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 Q3C1V9 767 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 PROCA1Q8NCQ7 364 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 WDR66Q8TBY9 1149 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 SENP6Q9GZR1 1112 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 PORCNQ9H237 461 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 C9orf78Q9NZ63 289 aaPredicted RBP10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 FLRT1Q9NZU1 646 aa10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 LRRFIP2Q9Y608 721 aaKnown RBP10.69□□□□□ -0.7
HMGB1P39-201ENST00000366304 UTYO14607 1347 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 GAKO14976 1311 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 KIF16BQ96L93 1317 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 POTEMA6NI47 508 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 XRCC5P13010 732 aaKnown RBP10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 FOSL2P15408 326 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 SHROOM1Q2M3G4 852 aaPredicted RBP10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 POTEGQ6S5H5 508 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 ZNF384Q8TF68 577 aa10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 P2RX7Q99572 595 aaKnown RBP10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 LBHD1Q9BQE6 289 aaPredicted RBP10.68□□□□□ -0.7
HMGB1P39-201ENST00000366304 CHD9Q3L8U1 2897 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 AK9Q5TCS8 1911 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 RFX5P48382 616 aaPredicted RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 EPHB4P54760 987 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 RTP1P59025 263 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 EXOSC9Q06265 439 aaKnown RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 DDX10Q13206 875 aaKnown RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 PICALMQ13492 652 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 GRIN2CQ14957 1233 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 PUM3Q15397 648 aaKnown RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 TJAP1Q5JTD0 557 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 MORN1Q5T089 497 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 SH3RF1Q7Z6J0 888 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 ZSCAN29Q8IWY8 852 aaPredicted RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 ZNF280CQ8ND82 737 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 TRPV1Q8NER1 839 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 SYMPKQ92797 1274 aaKnown RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 RYDENQ9NUL5 291 aaKnown RBP10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 RBPJLQ9UBG7 517 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 PNMA3Q9UL41 463 aa10.67□□□□□ -0.7
HMGB1P39-201ENST00000366304 ALDH1L1O75891 902 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 LDHBP07195 334 aaKnown RBP10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 ZKSCAN1P17029 563 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 ITGB8P26012 769 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 RHBDL3P58872 404 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 SMAD3P84022 425 aaKnown RBP10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 CCDC184Q52MB2 194 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 SH3D19Q5HYK7 790 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 SLC4A10Q6U841 1118 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 ATG9AQ7Z3C6 839 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 BADQ92934 168 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 NUDT12Q9BQG2 462 aa10.66□□□□□ -0.7
HMGB1P39-201ENST00000366304 SALL1Q9NSC2 1324 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 TMEM265A0A087WTH1 108 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 TRIM43BA6NCK2 446 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 GTPBP6O43824 516 aaPredicted RBP10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 IFIT1P09914 478 aaKnown RBP10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 PHKA1P46020 1223 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 CCDC27Q2M243 656 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 GPR142Q7Z601 462 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 TRIM43Q96BQ3 446 aaPredicted RBP10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 SRCIN1Q9C0H9 1055 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 NDUFB9Q9Y6M9 179 aa10.65□□□□□ -0.7
HMGB1P39-201ENST00000366304 FRMPD3Q5JV73 1810 aa10.65□□□□□ -0.71
HMGB1P39-201ENST00000366304 IL16Q14005 1332 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 TBC1D12O60347 775 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 IGHA2P01877 340 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 HOXB3P14651 431 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 CAP2P40123 477 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 HERVK_113P62684 666 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 MAP3K12Q12852 859 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 MTMR2Q13614 643 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 GPRC5AQ8NFJ5 357 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 SOCS4Q8WXH5 440 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 LPIN2Q92539 896 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 FAM122AQ96E09 287 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 PRKRIP1Q9H875 184 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 ATP11BQ9Y2G3 1177 aa10.64□□□□□ -0.71
HMGB1P39-201ENST00000366304 C2orf72A6NCS6 295 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 EYA2O00167 538 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 CNMDO75829 334 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 SLC5A1P13866 664 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 ADORA1P30542 326 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 HOXA7P31268 230 aaPredicted RBP10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 ZEB1P37275 1124 aaPredicted RBP10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 BTDP43251 543 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 ERVK-9P63128 1117 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 ERVK-24P63145 666 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 TRIM60Q495X7 471 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 GJC2Q5T442 439 aaPredicted RBP10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 APBA2Q99767 749 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 PDLIM7Q9NR12 457 aa10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 DDX20Q9UHI6 824 aaKnown RBP10.63□□□□□ -0.71
HMGB1P39-201ENST00000366304 USP17L5A8MUK1 530 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms