RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 ZNF277Q9NRM2 450 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-203ENST00000361654 TESPA1A2RU30 521 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 FAM160B1Q5W0V3 765 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 GIMAP6Q6P9H5 292 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 SND1Q7KZF4 910 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 CCDC24Q8N4L8 307 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 MIS12Q9H081 205 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 YEATS2Q9ULM3 1422 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 BCRP11274 1271 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 SYT1P21579 422 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 ATP5DP30049 168 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 HERC4Q5GLZ8 1057 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 RUFY3Q7L099 469 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 MAEAQ7L5Y9 396 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 CCDC25Q86WR0 208 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 CCDC89Q8N998 374 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 ELP1O95163 1332 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 PFDN6O15212 129 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 GPAA1O43292 621 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 GCKRQ14397 625 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 RPS6KC1Q96S38 1066 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 NT5C3AQ9H0P0 336 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 RPRD2Q5VT52 1461 aaKnown RBP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 TYW5A2RUC4 315 aaKnown RBP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 CEP85Q6P2H3 762 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 ARFGAP2Q8N6H7 521 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 SRRTQ9BXP5 876 aaKnown RBP12.19□□□□□ -0.46
CLIP1-203ENST00000361654 TCP10L2B9ZVM9 353 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 PRDM1O75626 825 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 ABL1P00519 1130 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 VAV2P52735 878 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 MAP7Q14244 749 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 CALCRLQ16602 461 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 VPS52Q8N1B4 723 aa12.19□□□□□ -0.46
CLIP1-203ENST00000361654 TNNC2P02585 160 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 TBC1D8BQ0IIM8 1120 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 DCTPP1Q9H773 170 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 PIK3C2GO75747 1445 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 TNNI1P19237 187 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 USP14P54578 494 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 TFAP4Q01664 338 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 TRIM14Q14142 442 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 PDZD4Q76G19 769 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-203ENST00000361654 PPP1R9BQ96SB3 815 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 JPH2Q9BR39 696 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-203ENST00000361654 CNPY2Q9Y2B0 182 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 POLR2MP0CAP2 368 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 SKILP12757 684 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 POLR2BP30876 1174 aaKnown RBP12.18□□□□□ -0.46
CLIP1-203ENST00000361654 TTC38Q5R3I4 469 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 EXOC8Q8IYI6 725 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 REXO1Q8N1G1 1221 aaKnown RBP12.18□□□□□ -0.46
CLIP1-203ENST00000361654 SELENOSQ9BQE4 189 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 RNF216Q9NWF9 866 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-203ENST00000361654 ASIC2Q16515 512 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 KLHL40Q2TBA0 621 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 LGSNQ5TDP6 509 aa12.18□□□□□ -0.46
CLIP1-203ENST00000361654 POLR3AO14802 1390 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-203ENST00000361654 ESYT2A0FGR8 921 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 CAPN9O14815 690 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 VAMP4O75379 141 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 TERF1P54274 439 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 SLC12A2P55011 1212 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 NKIRAS1Q9NYS0 192 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 ATP10AO60312 1499 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 ARHGEF37A1IGU5 675 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 CERKLQ49MI3 558 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-203ENST00000361654 KRT26Q7Z3Y9 468 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 ACTN4O43707 911 aaKnown RBP12.17□□□□□ -0.46
CLIP1-203ENST00000361654 NOL3O60936 208 aaKnown RBP12.17□□□□□ -0.46
CLIP1-203ENST00000361654 FLOT1O75955 427 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 KRT27Q7Z3Y8 459 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 KIAA0825Q8IV33 1275 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 GUCA1BQ9UMX6 200 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 TUBBP07437 444 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 IVLP07476 585 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 TFDP1Q14186 410 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 UAP1Q16222 522 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-203ENST00000361654 HESX1Q9UBX0 185 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 TACC3Q9Y6A5 838 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 KDM3AQ9Y4C1 1321 aa12.17□□□□□ -0.46
CLIP1-203ENST00000361654 SPDYE16A6NNV3 312 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 XPAP23025 273 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 SETDB1Q15047 1291 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 SPDYE2Q495Y8 402 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ZNF569Q5MCW4 686 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 DAAM2Q86T65 1068 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 MRPL44Q9H9J2 332 aaKnown RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 KCNK9Q9NPC2 374 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 RNF123Q5XPI4 1314 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 GCNT3O95395 438 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 CC2D2BQ6DHV5 1058 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 DBNDD2Q9BQY9 259 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ADD3Q9UEY8 706 aaKnown RBP12.16□□□□□ -0.46
CLIP1-203ENST00000361654 DNAI1Q9UI46 699 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 PCDHB13Q9Y5F0 798 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ATP10BO94823 1461 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 GOLGA8CPA6NN73 597 aa12.16□□□□□ -0.46
CLIP1-203ENST00000361654 ARFGAP3Q9NP61 516 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms