RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CRACR2BQ8N4Y2 399 aaPredicted RBP13.84□□□□□ -0.19
CLIP3-201ENST00000360535 BTG4Q9NY30 223 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 JAG2Q9Y219 1238 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 PHLPP2Q6ZVD8 1323 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 CDC25AP30304 524 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 PLA2G4AP47712 749 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 MED15Q96RN5 788 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 PLA2G12BQ9BX93 195 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 MRPL44Q9H9J2 332 aaKnown RBP13.84□□□□□ -0.19
CLIP3-201ENST00000360535 WDR19Q8NEZ3 1342 aa13.84□□□□□ -0.19
CLIP3-201ENST00000360535 ALS2Q96Q42 1657 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 TADA3O75528 432 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 LIFRP42702 1097 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 MDM2Q00987 491 aaPredicted RBP13.83□□□□□ -0.19
CLIP3-201ENST00000360535 TMEM139Q8IV31 216 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 IGSF22Q8N9C0 903 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 ACSBG1Q96GR2 724 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 TEX13AQ9BXU3 409 aaPredicted RBP13.83□□□□□ -0.19
CLIP3-201ENST00000360535 CNNM2Q9H8M5 875 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 KCND1Q9NSA2 647 aa13.83□□□□□ -0.19
CLIP3-201ENST00000360535 TNKSO95271 1327 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 A0A087X0B3 334 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 WNT7AO00755 349 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 DEXIO95424 95 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 RBL2Q08999 1139 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 SUSD4Q5VX71 490 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 NUTM2AQ8IVF1 878 aaPredicted RBP13.83□□□□□ -0.2
CLIP3-201ENST00000360535 KCPQ6ZWJ8 1503 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 TRIM75PA6NK02 468 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 PLEKHA8P1O95397 391 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 GYG1P46976 350 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 NKX1-1Q15270 411 aaPredicted RBP13.83□□□□□ -0.2
CLIP3-201ENST00000360535 MLKLQ8NB16 471 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 NEK11Q8NG66 645 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 DACH1Q9UI36 760 aa13.83□□□□□ -0.2
CLIP3-201ENST00000360535 COL18A1P39060 1754 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 ARID4AP29374 1257 aaPredicted RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 DYNLL1P63167 89 aaKnown RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 TICAM2Q86XR7 235 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 SYMPKQ92797 1274 aaKnown RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 EEF2KMTQ96G04 330 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 ZFP91Q96JP5 570 aaPredicted RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 VPS16Q9H269 839 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 RNF216Q9NWF9 866 aaPredicted RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 AKR1B15C9JRZ8 316 aaPredicted RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 CYP19A1P11511 503 aaPredicted RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 CD44P16070 742 aaKnown RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 EVX2Q03828 476 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 PPARAQ07869 468 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 ADGRA1Q86SQ6 560 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 AKAP11Q9UKA4 1901 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 DHX8Q14562 1220 aaKnown RBP13.82□□□□□ -0.2
CLIP3-201ENST00000360535 ZNF569Q5MCW4 686 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 BICDL1Q6ZP65 573 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 CTNND2Q9UQB3 1225 aa13.82□□□□□ -0.2
CLIP3-201ENST00000360535 MYH7P12883 1935 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 CCDC196A0A1B0GTZ2 297 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 EFCAB8A8MWE9 144 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 MORC3Q14149 939 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 PLIN2Q99541 437 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 PARD6BQ9BYG5 372 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 ACTN4O43707 911 aaKnown RBP13.81□□□□□ -0.2
CLIP3-201ENST00000360535 STX10O60499 249 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 IGHMBP2P38935 993 aaKnown RBP13.81□□□□□ -0.2
CLIP3-201ENST00000360535 MCM6Q14566 821 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 KIF4BQ2VIQ3 1234 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 RASSF8Q8NHQ8 419 aa13.81□□□□□ -0.2
CLIP3-201ENST00000360535 ENOX1Q8TC92 643 aaKnown RBP13.81□□□□□ -0.2
CLIP3-201ENST00000360535 SRPRBQ9Y5M8 271 aaKnown RBP13.81□□□□□ -0.2
CLIP3-201ENST00000360535 NMT2O60551 498 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 SASH3O75995 380 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 CASP14P31944 242 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 MCM7P33993 719 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 IFIT1BQ5T764 474 aaKnown RBP13.8□□□□□ -0.2
CLIP3-201ENST00000360535 FOXP1Q9H334 677 aaPredicted RBP13.8□□□□□ -0.2
CLIP3-201ENST00000360535 CEP131Q9UPN4 1083 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 SYNRGQ9UMZ2 1314 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 NUP188Q5SRE5 1749 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 GLI3P10071 1580 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 LAMB4A4D0S4 1761 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 CCDC175P0C221 793 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 RHOXF2BP0C7M4 288 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 KCNJ6P48051 423 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 FAM47AQ5JRC9 791 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 RAD9BQ6WBX8 426 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 ACRBPQ8NEB7 543 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 RHOXF2Q9BQY4 288 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 CDHR2Q9BYE9 1310 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 C4AP0C0L4 1744 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 C4BP0C0L5 1744 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 ABL1P00519 1130 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 XBP1P17861 261 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 OAS2P29728 719 aaKnown RBP13.8□□□□□ -0.2
CLIP3-201ENST00000360535 PLCD1P51178 756 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 RRAGBQ5VZM2 374 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 MROH5Q6ZUA9 1318 aa13.8□□□□□ -0.2
CLIP3-201ENST00000360535 MAGEB6P1A0A0J9YX57 407 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 N4BP3O15049 544 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 ZNF18P17022 549 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 ST5P78524 1137 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms