RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SIPA1L1O43166 1804 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 SHMT1P34896 483 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 TNNI2P48788 182 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 EVCP57679 992 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 RASA3Q14644 834 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 IQCA1Q86XH1 822 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 CRACR2BQ8N4Y2 399 aaPredicted RBP23.39■■□□□ 1.34
CLN3-205ENST00000359984 ZSCAN10Q96SZ4 725 aaPredicted RBP23.39■■□□□ 1.34
CLN3-205ENST00000359984 PGAP2Q9UHJ9 254 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 BRPF3Q9ULD4 1205 aa23.39■■□□□ 1.34
CLN3-205ENST00000359984 TNKSO95271 1327 aa23.39■■□□□ 1.33
CLN3-205ENST00000359984 LIFRP42702 1097 aa23.39■■□□□ 1.33
CLN3-205ENST00000359984 TNFAIP1Q13829 316 aa23.39■■□□□ 1.33
CLN3-205ENST00000359984 SEC23AQ15436 765 aa23.39■■□□□ 1.33
CLN3-205ENST00000359984 FOXD4L1Q9NU39 408 aa23.39■■□□□ 1.33
CLN3-205ENST00000359984 FAM196BA6NMK8 535 aa23.38■■□□□ 1.33
CLN3-205ENST00000359984 NMT2O60551 498 aa23.38■■□□□ 1.33
CLN3-205ENST00000359984 CDAN1Q8IWY9 1227 aa23.38■■□□□ 1.33
CLN3-205ENST00000359984 NECAB1Q8N987 351 aa23.38■■□□□ 1.33
CLN3-205ENST00000359984 TAOK2Q9UL54 1235 aa23.38■■□□□ 1.33
CLN3-205ENST00000359984 ERICH2A1L162 156 aa23.37■■□□□ 1.33
CLN3-205ENST00000359984 HSP90AA1P07900 732 aaKnown RBP23.37■■□□□ 1.33
CLN3-205ENST00000359984 TSPY3P0CV98 308 aa23.37■■□□□ 1.33
CLN3-205ENST00000359984 TSPY8P0CW00 308 aa23.37■■□□□ 1.33
CLN3-205ENST00000359984 WTAPQ15007 396 aa23.37■■□□□ 1.33
CLN3-205ENST00000359984 ANGEL2Q5VTE6 544 aaKnown RBP23.37■■□□□ 1.33
CLN3-205ENST00000359984 ENAHQ8N8S7 591 aaPredicted RBP23.37■■□□□ 1.33
CLN3-205ENST00000359984 ZNF274Q96GC6 653 aaPredicted RBP23.37■■□□□ 1.33
CLN3-205ENST00000359984 KLF18A0A0U1RQI7 1052 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 PDIA3P30101 505 aaKnown RBP23.36■■□□□ 1.33
CLN3-205ENST00000359984 ST3GAL1Q11201 340 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 STK3Q13188 491 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 SGMS1Q86VZ5 419 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 TRIM34Q9BYJ4 488 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 IL17RBQ9NRM6 502 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 NEDD1Q8NHV4 660 aa23.36■■□□□ 1.33
CLN3-205ENST00000359984 NAP1L2Q9ULW6 460 aaPredicted RBP23.36■■□□□ 1.33
CLN3-205ENST00000359984 TATDN1Q6P1N9 297 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 NFXL1Q6ZNB6 911 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 CCDC83Q8IWF9 413 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 TMTC2Q8N394 836 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 TEPSINQ96N21 525 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 DEFB129Q9H1M3 183 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 TCP11L1Q9NUJ3 509 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 GGA3Q9NZ52 723 aa23.35■■□□□ 1.33
CLN3-205ENST00000359984 PFKFB2O60825 505 aa23.34■■□□□ 1.33
CLN3-205ENST00000359984 AKR1B1P15121 316 aa23.34■■□□□ 1.33
CLN3-205ENST00000359984 APOBEC3FQ8IUX4 373 aaKnown RBP23.34■■□□□ 1.33
CLN3-205ENST00000359984 SLKQ9H2G2 1235 aaPredicted RBP23.34■■□□□ 1.33
CLN3-205ENST00000359984 HERC5Q9UII4 1024 aaKnown RBP23.34■■□□□ 1.33
CLN3-205ENST00000359984 APOA5Q6Q788 366 aa23.34■■□□□ 1.33
CLN3-205ENST00000359984 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-205ENST00000359984 HPS5Q9UPZ3 1129 aa23.34■■□□□ 1.33
CLN3-205ENST00000359984 CCDC69A6NI79 296 aa23.33■■□□□ 1.33
CLN3-205ENST00000359984 IFIT1BQ5T764 474 aaKnown RBP23.33■■□□□ 1.33
CLN3-205ENST00000359984 RCSD1Q6JBY9 416 aa23.33■■□□□ 1.33
CLN3-205ENST00000359984 GTF3C6Q969F1 213 aa23.33■■□□□ 1.33
CLN3-205ENST00000359984 INTS4Q96HW7 963 aaKnown RBP23.33■■□□□ 1.33
CLN3-205ENST00000359984 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLN3-205ENST00000359984 GOLGA8BA8MQT2 603 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 POTECB2RU33 542 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 EPHX2P34913 555 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 CCT2P78371 535 aaKnown RBP23.32■■□□□ 1.32
CLN3-205ENST00000359984 RAB11FIP4Q86YS3 637 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 CCDC17Q96LX7 622 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 PLIN4Q96Q06 1357 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 DCAF8L1A6NGE4 600 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 TBC1D12O60347 775 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 SCRN1Q12765 414 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 CERKLQ49MI3 558 aaPredicted RBP23.32■■□□□ 1.32
CLN3-205ENST00000359984 CCDC178Q5BJE1 867 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 DGKHQ86XP1 1220 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 ANKS1AQ92625 1134 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 SLC12A7Q9Y666 1083 aa23.32■■□□□ 1.32
CLN3-205ENST00000359984 PITPNM2Q9BZ72 1349 aa23.31■■□□□ 1.32
CLN3-205ENST00000359984 MAP3K10Q02779 954 aa23.31■■□□□ 1.32
CLN3-205ENST00000359984 USP50Q70EL3 339 aaPredicted RBP23.31■■□□□ 1.32
CLN3-205ENST00000359984 MIGA2Q7L4E1 593 aa23.31■■□□□ 1.32
CLN3-205ENST00000359984 IGKV6D-41A0A0C4DH26 115 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 MYL10Q9BUA6 226 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 NCOA5Q9HCD5 579 aaKnown RBP23.3■■□□□ 1.32
CLN3-205ENST00000359984 IQCA1LA6NCM1 817 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 ZBTB43O43298 467 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 RRP1BQ14684 758 aaKnown RBP23.3■■□□□ 1.32
CLN3-205ENST00000359984 ZNF654Q8IZM8 581 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 CEP95Q96GE4 821 aa23.3■■□□□ 1.32
CLN3-205ENST00000359984 TAF1DQ9H5J8 278 aaPredicted RBP23.3■■□□□ 1.32
CLN3-205ENST00000359984 MPHOSPH10O00566 681 aaKnown RBP23.29■■□□□ 1.32
CLN3-205ENST00000359984 RXRAP19793 462 aa23.29■■□□□ 1.32
CLN3-205ENST00000359984 NOVP48745 357 aa23.29■■□□□ 1.32
CLN3-205ENST00000359984 SHROOM1Q2M3G4 852 aaPredicted RBP23.29■■□□□ 1.32
CLN3-205ENST00000359984 NBPF12Q5TAG4 269 aaPredicted RBP23.29■■□□□ 1.32
CLN3-205ENST00000359984 SYNE3Q6ZMZ3 975 aa23.29■■□□□ 1.32
CLN3-205ENST00000359984 MICU3Q86XE3 530 aa23.29■■□□□ 1.32
CLN3-205ENST00000359984 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.29■■□□□ 1.32
CLN3-205ENST00000359984 MYH8P13535 1937 aa23.29■■□□□ 1.32
CLN3-205ENST00000359984 DTNBO60941 627 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 MTMR4Q9NYA4 1195 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 GDF11O95390 407 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 DDIT3P35638 169 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms