RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SWAP70Q9UH65 585 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 ZBTB21Q9ULJ3 1066 aa20.33■□□□□ 0.85
CLN3-203ENST00000357806 GREB1LQ9C091 1923 aaPredicted RBP20.33■□□□□ 0.85
CLN3-203ENST00000357806 USP17L5A8MUK1 530 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 USP17L12C9JPN9 530 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 USP17L21D6R901 530 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 TBC1D8O95759 1140 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 C12orf60Q5U649 245 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 CCDC84Q86UT8 332 aaPredicted RBP20.32■□□□□ 0.84
CLN3-203ENST00000357806 ZCCHC17Q9NP64 241 aaKnown RBP20.32■□□□□ 0.84
CLN3-203ENST00000357806 HELLSQ9NRZ9 838 aa20.32■□□□□ 0.84
CLN3-203ENST00000357806 A0A0G2JLL6 359 aaPredicted RBP20.31■□□□□ 0.84
CLN3-203ENST00000357806 TRIM75PA6NK02 468 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 APPP05067 770 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 SHMT1P34896 483 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 TDO2P48775 406 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 EVX2Q03828 476 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 CERKLQ49MI3 558 aaPredicted RBP20.31■□□□□ 0.84
CLN3-203ENST00000357806 TTC22Q5TAA0 569 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 CTR9Q6PD62 1173 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 PRRT2Q7Z6L0 340 aaPredicted RBP20.31■□□□□ 0.84
CLN3-203ENST00000357806 NACAP1Q9BZK3 213 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 MYH4Q9Y623 1939 aa20.31■□□□□ 0.84
CLN3-203ENST00000357806 PATL2C9JE40 543 aaKnown RBP20.3■□□□□ 0.84
CLN3-203ENST00000357806 SBK1Q52WX2 424 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 FAM43AQ8N2R8 423 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 ZNF280CQ8ND82 737 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 EPB41L4AQ9HCS5 686 aaPredicted RBP20.3■□□□□ 0.84
CLN3-203ENST00000357806 MGAMO43451 1857 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 CYP2D7A0A087X1C5 515 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 A0A0D9SFI3 127 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 BTBD19C9JJ37 291 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 GH2P01242 217 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 TAF1CQ15572 869 aaPredicted RBP20.3■□□□□ 0.84
CLN3-203ENST00000357806 ABCB5Q2M3G0 1257 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 NOM1Q5C9Z4 860 aaKnown RBP20.3■□□□□ 0.84
CLN3-203ENST00000357806 CCDC129Q6ZRS4 1044 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 FASTKD5Q7L8L6 764 aaKnown RBP20.3■□□□□ 0.84
CLN3-203ENST00000357806 CCDC136Q96JN2 1154 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 FAM227BQ96M60 508 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 ROBO3Q96MS0 1386 aa20.3■□□□□ 0.84
CLN3-203ENST00000357806 HIP1O00291 1037 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 SDSP20132 328 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 JAG1P78504 1218 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 SPP2Q13103 211 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 NMIQ13287 307 aaPredicted RBP20.29■□□□□ 0.84
CLN3-203ENST00000357806 CRHR2Q13324 411 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 SHROOM1Q2M3G4 852 aaPredicted RBP20.29■□□□□ 0.84
CLN3-203ENST00000357806 MCMDC2Q4G0Z9 681 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 COL13A1Q5TAT6 717 aaPredicted RBP20.29■□□□□ 0.84
CLN3-203ENST00000357806 C16orf86Q6ZW13 317 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 ANKRD23Q86SG2 305 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 IFNL3Q8IZI9 196 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 SLC44A5Q8NCS7 719 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 DYNLL2Q96FJ2 89 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 CABP5Q9NP86 173 aa20.29■□□□□ 0.84
CLN3-203ENST00000357806 GSPT1P15170 499 aaKnown RBP20.28■□□□□ 0.84
CLN3-203ENST00000357806 MOGSQ13724 837 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 GADL1Q6ZQY3 521 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 WDR18Q9BV38 432 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 NAPBQ9H115 298 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 ZFYVE28Q9HCC9 887 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 DIAPH3Q9NSV4 1193 aa20.28■□□□□ 0.84
CLN3-203ENST00000357806 MINDY4BA8MYZ0 360 aa20.27■□□□□ 0.84
CLN3-203ENST00000357806 GPR25O00155 361 aa20.27■□□□□ 0.84
CLN3-203ENST00000357806 RAB3GAP1Q15042 981 aa20.27■□□□□ 0.84
CLN3-203ENST00000357806 CCDC171Q6TFL3 1326 aa20.26■□□□□ 0.83
CLN3-203ENST00000357806 PDHXO00330 501 aa20.26■□□□□ 0.83
CLN3-203ENST00000357806 MPHOSPH10O00566 681 aaKnown RBP20.26■□□□□ 0.83
CLN3-203ENST00000357806 CDK8P49336 464 aa20.26■□□□□ 0.83
CLN3-203ENST00000357806 MFAP1P55081 439 aaKnown RBP20.26■□□□□ 0.83
CLN3-203ENST00000357806 PROCA1Q8NCQ7 364 aaPredicted RBP20.26■□□□□ 0.83
CLN3-203ENST00000357806 R3HDMLQ9H3Y0 253 aa20.26■□□□□ 0.83
CLN3-203ENST00000357806 SMIM22K7EJ46 135 aa20.25■□□□□ 0.83
CLN3-203ENST00000357806 MTMR2Q13614 643 aa20.25■□□□□ 0.83
CLN3-203ENST00000357806 ZNF296Q8WUU4 475 aaPredicted RBP20.25■□□□□ 0.83
CLN3-203ENST00000357806 CCDC17Q96LX7 622 aa20.25■□□□□ 0.83
CLN3-203ENST00000357806 ZSWIM8A7E2V4 1837 aa20.25■□□□□ 0.83
CLN3-203ENST00000357806 USP17L10C9JJH3 530 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 HMGCS2P54868 508 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 BACE1P56817 501 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 SH3D19Q5HYK7 790 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 GPAT2Q6NUI2 795 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 TMEM179Q6ZVK1 233 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 ZNF589Q86UQ0 364 aaPredicted RBP20.24■□□□□ 0.83
CLN3-203ENST00000357806 AGTPBP1Q9UPW5 1226 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 SLC45A1Q9Y2W3 748 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 PARP14Q460N5 1801 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 C19orf81C9J6K1 198 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 FOXP2O15409 715 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 FKTNO75072 461 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 VPS53Q5VIR6 699 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 CWC27Q6UX04 472 aaKnown RBP20.24■□□□□ 0.83
CLN3-203ENST00000357806 PARK7Q99497 189 aaKnown RBP20.24■□□□□ 0.83
CLN3-203ENST00000357806 FEZ1Q99689 392 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 ZNF287Q9HBT7 754 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 TMOD4Q9NZQ9 345 aa20.24■□□□□ 0.83
CLN3-203ENST00000357806 ZMYM6O95789 1325 aa20.23■□□□□ 0.83
CLN3-203ENST00000357806 TLR2O60603 784 aa20.23■□□□□ 0.83
CLN3-203ENST00000357806 SLC3A2P08195 630 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms