RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TBX2Q13207 712 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 TOB2Q14106 344 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 SPECC1LQ69YQ0 1117 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 IQCEQ6IPM2 695 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 RCSD1Q6JBY9 416 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 ARMC2Q8NEN0 867 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 COG1Q8WTW3 980 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 ITFG2Q969R8 447 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 NAPGQ99747 312 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 ACTR5Q9H9F9 607 aaPredicted RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 IL1RAPL2Q9NP60 686 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 RTEL1Q9NZ71 1219 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 PUF60Q9UHX1 559 aaKnown RBP9.22□□□□□ -0.93
ATG4A-201ENST00000343524 HPCAL4Q9UM19 191 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 UTRNP46939 3433 aa9.22□□□□□ -0.93
ATG4A-201ENST00000343524 SRRM3A6NNA2 597 aaPredicted RBP9.21□□□□□ -0.93
ATG4A-201ENST00000343524 OPA1O60313 960 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 PFKFB2O60825 505 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 SURF6O75683 361 aaKnown RBP9.21□□□□□ -0.93
ATG4A-201ENST00000343524 IFIT2P09913 472 aaKnown RBP9.21□□□□□ -0.93
ATG4A-201ENST00000343524 NEFHP12036 1026 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 APLP1P51693 650 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 CKAP4Q07065 602 aaKnown RBP9.21□□□□□ -0.93
ATG4A-201ENST00000343524 SLMAPQ14BN4 828 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 SF3A1Q15459 793 aaKnown RBP9.21□□□□□ -0.93
ATG4A-201ENST00000343524 TMEM132EQ6IEE7 984 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 CCDC70Q6NSX1 233 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 TAX1BP1Q86VP1 789 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 ATP6V0A4Q9HBG4 840 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 ECHDC1Q9NTX5 307 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 BTG4Q9NY30 223 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 ETAA1Q9NY74 926 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 MYO6Q9UM54 1294 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 CEMIPQ8WUJ3 1361 aa9.21□□□□□ -0.93
ATG4A-201ENST00000343524 TNS3Q68CZ2 1445 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 ANKRD33BA6NCL7 494 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 TTC36A6NLP5 189 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 PPP1R37O75864 691 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 HMGB1P09429 215 aaKnown RBP9.21□□□□□ -0.94
ATG4A-201ENST00000343524 FNTAP49354 379 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 CLNS1AP54105 237 aaKnown RBP9.21□□□□□ -0.94
ATG4A-201ENST00000343524 RWDD2BP57060 319 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 ADCY2Q08462 1091 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 BRAPQ7Z569 592 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 CLASRPQ8N2M8 674 aaKnown RBP9.21□□□□□ -0.94
ATG4A-201ENST00000343524 CCDC51Q96ER9 411 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 USP28Q96RU2 1077 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 PLCD4Q9BRC7 762 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 PLEKHA4Q9H4M7 779 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 VCPKMTQ9H867 229 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 HOMER3Q9NSC5 361 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 HOOK1Q9UJC3 728 aaKnown RBP9.21□□□□□ -0.94
ATG4A-201ENST00000343524 RGPD3A6NKT7 1758 aaPredicted RBP9.21□□□□□ -0.94
ATG4A-201ENST00000343524 RGPD4Q7Z3J3 1758 aa9.21□□□□□ -0.94
ATG4A-201ENST00000343524 RFX7Q2KHR2 1363 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 NUTM2FA1L443 756 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 ANKRD18BA2A2Z9 1011 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 NDUFAB1O14561 156 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 RHOXF2BP0C7M4 288 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 SKOR1P84550 965 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 STK38Q15208 465 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 RBBP5Q15291 538 aaKnown RBP9.2□□□□□ -0.94
ATG4A-201ENST00000343524 SNCBQ16143 134 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 NUTM2GQ5VZR2 741 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 TOGARAM2Q6ZUX3 1019 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 KRT28Q7Z3Y7 464 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 RSRC1Q96IZ7 334 aaKnown RBP9.2□□□□□ -0.94
ATG4A-201ENST00000343524 FMNL2Q96PY5 1086 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 RHOXF2Q9BQY4 288 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 KAT14Q9H8E8 782 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 KLC4Q9NSK0 619 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 POLR3EQ9NVU0 708 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 TUBE1Q9UJT0 475 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 CRB1P82279 1406 aa9.2□□□□□ -0.94
ATG4A-201ENST00000343524 MED23Q9ULK4 1368 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 GOLGA6BA6NDN3 693 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 CLSTN1O94985 981 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 NUDT7P0C024 238 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 GNGT1P63211 74 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 CEBPZQ03701 1054 aaKnown RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 GRIK3Q13003 919 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 FLIIQ13045 1269 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 PDCD2Q16342 344 aaPredicted RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 TICAM2Q86XR7 235 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 PDILTQ8N807 584 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 TC2NQ8N9U0 490 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 FBXW7Q969H0 707 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 CLIC6Q96NY7 704 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 ZSWIM4Q9H7M6 989 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 CPSF2Q9P2I0 782 aaKnown RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 PCDHA7Q9UN72 937 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 LRRC37A3O60309 1634 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 COL14A1Q05707 1796 aaKnown RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 AKR1B15C9JRZ8 316 aaPredicted RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 F6X3S4 739 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 EPB41P11171 864 aaKnown RBP9.19□□□□□ -0.94
ATG4A-201ENST00000343524 NDUFA8P51970 172 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 USP14P54578 494 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 APBA1Q02410 837 aa9.19□□□□□ -0.94
ATG4A-201ENST00000343524 TRAF1Q13077 416 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms