RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GPATCH11Q8N954 259 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 STMN2Q93045 179 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 POLR2DO15514 142 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 IRX4P78413 519 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 ZBTB16Q05516 673 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 SNRKQ9NRH2 765 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 EXOC7Q9UPT5 735 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 LUC7L3O95232 432 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 MCM7P33993 719 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 DNA2P51530 1060 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 INTS8Q75QN2 995 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 BCAP29Q9UHQ4 241 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 CALR3Q96L12 384 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 GPR108Q9NPR9 543 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 CIB2O75838 187 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 DNM2P50570 870 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 SMTNP53814 917 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 LRRC2Q9BYS8 371 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 PNMA2Q9UL42 364 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 CDC37L1Q7L3B6 337 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 RAB3IPQ96QF0 476 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 DAAM2Q86T65 1068 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 WDR66Q8TBY9 1149 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 IFIH1Q9BYX4 1025 aaKnown RBP11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 PLEKHG3A1L390 1219 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 CSGALNACT2Q8N6G5 542 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 IWS1Q96ST2 819 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 SETDB2Q96T68 719 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 RTEL1Q9NZ71 1219 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 VWA3AA6NCI4 1184 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 ZEB2O60315 1214 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 BCRP11274 1271 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 SLC17A8Q8NDX2 589 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 RUBCNQ92622 972 aa11.46□□□□□ -0.57
CCDC88A-202ENST00000336838 H7C1D1 291 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 TTC38Q5R3I4 469 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 SH2D4BQ5SQS7 431 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 GSTA5Q7RTV2 222 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 ANKARQ7Z5J8 1434 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 TCP1P17987 556 aaKnown RBP11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 PHLDB2Q86SQ0 1253 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 VTI1AQ96AJ9 217 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 BICD1Q96G01 975 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 VCX3BQ9H321 246 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 MYSM1Q5VVJ2 828 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 NOSTRINQ8IVI9 506 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 C19orf44Q9H6X5 657 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 ABCC3O15438 1527 aa11.46□□□□□ -0.58
CCDC88A-202ENST00000336838 SMARCC2Q8TAQ2 1214 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 PLEKHF1Q96S99 279 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 HAUS7Q99871 368 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 GPAA1O43292 621 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 LIN9Q5TKA1 542 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 CAPZA3Q96KX2 299 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 C10orf76Q5T2E6 689 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 TTC6Q86TZ1 520 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 ANAPC4Q9UJX5 808 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 SOS2Q07890 1332 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 CCDC151A5D8V7 595 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 NBPF14Q5TI25 921 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 PPP1R2P3Q6NXS1 205 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 CEP57Q86XR8 500 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 VCXQ9H320 206 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 SAMM50Q9Y512 469 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 CETN3O15182 167 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 OAS2P29728 719 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 MAN1A1P33908 653 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 GCKRQ14397 625 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 OR8K1Q8NGG5 319 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 ADGRB3O60242 1522 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 SH3TC1Q8TE82 1336 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 EEF1GP26641 437 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 MAP3K21Q5TCX8 1036 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 DENND2CQ68D51 928 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 UBLCP1Q8WVY7 318 aaPredicted RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 PXDNLA1KZ92 1463 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 LDHBP07195 334 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 ZSCAN26Q16670 478 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 LPIN2Q92539 896 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 P3H4Q92791 437 aa11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 PUF60Q9UHX1 559 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-202ENST00000336838 PPP6R2O75170 966 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 CIAO1O76071 339 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 CNPY4Q8N129 248 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 IFT81Q8WYA0 676 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 BPIFA3Q9BQP9 254 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 RPAP1Q9BWH6 1393 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 N4BP1O75113 896 aaKnown RBP11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 GAS8O95995 478 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 KARSQ15046 597 aaKnown RBP11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 TCEANC2Q96MN5 208 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 SLC52A2Q9HAB3 445 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 GPT2Q8TD30 523 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 USP19O94966 1318 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 ASIC2Q16515 512 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 GSDMAQ96QA5 445 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 PPLO60437 1756 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 EVI5O60447 810 aa11.44□□□□□ -0.58
CCDC88A-202ENST00000336838 GPTP24298 496 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms