RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 IMMTQ16891 758 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 FKBP15Q5T1M5 1219 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 METTL22Q9BUU2 404 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 NBPF3Q9H094 633 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 FAM169AQ9Y6X4 670 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 BTBD18B2RXH4 712 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 PI16Q6UXB8 463 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 RALYLQ86SE5 291 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 STAMQ92783 540 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 PUS7LQ9H0K6 701 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 KCNJ14Q9UNX9 436 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 PXDNQ92626 1479 aa15.25■□□□□ 0.03
CCDC88C-201ENST00000331194 ANKARQ7Z5J8 1434 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 ANKRD13DQ6ZTN6 518 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 ATG9AQ7Z3C6 839 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 SUGP1Q8IWZ8 645 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 KRI1Q8N9T8 703 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 CHP1Q99653 195 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 CXorf56Q9H5V9 222 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 AGPSO00116 658 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 CPP00450 1065 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 METAP2P50579 478 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 TOB1P50616 345 aaPredicted RBP15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 CYB5R4Q7L1T6 521 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 MLKLQ8NB16 471 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 GBP3Q9H0R5 595 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 CEP83Q9Y592 693 aa15.24■□□□□ 0.03
CCDC88C-201ENST00000331194 FAM237AA0A1B0GTK4 181 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 GUCY1A2P33402 732 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 SARSP49591 514 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 IRAK1P51617 712 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 PIP4K2BP78356 416 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 AMPD2Q01433 879 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 STIM1Q13586 685 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 MSL3Q8N5Y2 521 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 ANKRD24Q8TF21 1146 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 BCCIPQ9P287 314 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 ADD3Q9UEY8 706 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 MRC1P22897 1456 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 MYO1BO43795 1136 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 RANBP6O60518 1105 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 CCDC172P0C7W6 258 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 TRDNQ13061 729 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 WHAMMP3Q1A5X7 153 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 CMTR1Q8N1G2 835 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 CCDC148Q8NFR7 591 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 NCOA7Q8NI08 942 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 IP6K1Q92551 441 aa15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 PUS3Q9BZE2 481 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-201ENST00000331194 MED1Q15648 1581 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 ZNF185O15231 689 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 IBSPP21815 317 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 USP14P54578 494 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 PPARDQ03181 441 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 BCAS4Q8TDM0 211 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 VPS16Q9H269 839 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 ACBD3Q9H3P7 528 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 PCDHB6Q9Y5E3 794 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 RFX7Q2KHR2 1363 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 ATP1A1P05023 1023 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 PLCD1P51178 756 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 EIF5P55010 431 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 SCARF1Q14162 830 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 WDR93Q6P2C0 686 aa15.22■□□□□ 0.03
CCDC88C-201ENST00000331194 PBX1P40424 430 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 AARSP49588 968 aaKnown RBP eCLIP15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 CCDC91Q7Z6B0 441 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 FAM212AQ96EL1 285 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 SLC26A6Q9BXS9 759 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 HEG1Q9ULI3 1381 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 A0A087X0B3 334 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 ZNF213O14771 459 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 ADORA1P30542 326 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 DPYDQ12882 1025 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 NR5A1Q13285 461 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 COG1Q8WTW3 980 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 NLRP2Q9NX02 1062 aa15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 REXO2Q9Y3B8 237 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-201ENST00000331194 MYO1FO00160 1098 aa15.21■□□□□ 0.02
CCDC88C-201ENST00000331194 FBXL16Q8N461 479 aa15.21■□□□□ 0.02
CCDC88C-201ENST00000331194 NUP88Q99567 741 aaPredicted RBP15.21■□□□□ 0.02
CCDC88C-201ENST00000331194 FBXO2Q9UK22 296 aaPredicted RBP15.21■□□□□ 0.02
CCDC88C-201ENST00000331194 WWC3Q9ULE0 1092 aa15.21■□□□□ 0.02
CCDC88C-201ENST00000331194 B4E1Z4 1266 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 EBAG9O00559 213 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 CSB-PGBD3P0DP91 1061 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 MAP2K2P36507 400 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 RABL6Q3YEC7 729 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 SWT1Q5T5J6 900 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 CCDC85AQ96PX6 553 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 TTF2Q9UNY4 1162 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 UBN2Q6ZU65 1347 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 RGPD2P0DJD1 1756 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 GOLGA6CA6NDK9 693 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 ACTN4O43707 911 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 GOLGA6DP0CG33 693 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 IARSP41252 1262 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 GSCP56915 257 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 NT5DC1Q5TFE4 455 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms