RNA–Protein interactions for RNA: ENST00000329553.2

RIPPLY3-201, Transcript of ripply transcriptional repressor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RIPPLY3, Length 2,235 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPPLY3-201ENST00000329553 TFAP4Q01664 338 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 TPRNQ4KMQ1 711 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 HHIPL2Q6UWX4 724 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 SUPT20HQ8NEM7 779 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 ALG1Q9BT22 464 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 UBE2Q2LH0YL09 131 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 SSRP1Q08945 709 aaKnown RBP23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 SLC26A6Q9BXS9 759 aa23.57■■□□□ 1.36
RIPPLY3-201ENST00000329553 CCDC196A0A1B0GTZ2 297 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 FKBP1AP62942 108 aaKnown RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 CATIPQ7Z7H3 387 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 ILDR1Q86SU0 546 aaPredicted RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 CMTR1Q8N1G2 835 aaKnown RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 TEKT1Q969V4 418 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 SCAND2PQ9GZW5 306 aaPredicted RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 ATF5Q9Y2D1 282 aaPredicted RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 USP17L3A6NCW0 530 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 USP17L4A6NCW7 530 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 FMNL1O95466 1100 aaPredicted RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 APOBEC3HQ6NTF7 200 aaKnown RBP23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 USP17L1Q7RTZ2 530 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 KIAA0825Q8IV33 1275 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 CCDC82Q8N4S0 544 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 USP40Q9NVE5 1235 aa23.56■■□□□ 1.36
RIPPLY3-201ENST00000329553 MYH1P12882 1939 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 PPIP5K2O43314 1243 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 TROAPQ12815 778 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 CCDC93Q567U6 631 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 RCSD1Q6JBY9 416 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 NBPF11Q86T75 865 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 IL17RBQ9NRM6 502 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 STK36Q9NRP7 1315 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 DDX60LQ5H9U9 1706 aaKnown RBP23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 WDHD1O75717 1129 aaPredicted RBP23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 CRKP46108 304 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 NT5C2P49902 561 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 PICALMQ13492 652 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 PPP2R5BQ15173 497 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 ZNF444Q8N0Y2 327 aaPredicted RBP23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 CRACR2BQ8N4Y2 399 aaPredicted RBP23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 LEO1Q8WVC0 666 aaPredicted RBP23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 SPATA32Q96LK8 384 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 ELP1O95163 1332 aa23.55■■□□□ 1.36
RIPPLY3-201ENST00000329553 ADAMTSL1Q8N6G6 1762 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 GRIPAP1Q4V328 841 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 CDC42EP5Q6NZY7 148 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 C16orf86Q6ZW13 317 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 RTKN2Q8IZC4 609 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 RGS22Q8NE09 1264 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 SYAP1Q96A49 352 aaPredicted RBP23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 DDX4Q9NQI0 724 aaKnown RBP23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 FOCADQ5VW36 1801 aa23.54■■□□□ 1.36
RIPPLY3-201ENST00000329553 RASA1P20936 1047 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 CDK8P49336 464 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 YDJCA8MPS7 323 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 GUCY1A2P33402 732 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 MRIQ9BWK5 157 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 CFAP45Q9UL16 551 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 TAOK2Q9UL54 1235 aa23.53■■□□□ 1.36
RIPPLY3-201ENST00000329553 ZNF646O15015 1829 aaPredicted RBP23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 KIF13BQ9NQT8 1826 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 KRT40Q6A162 431 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 ZDHHC15Q96MV8 337 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 PCDHAC2Q9Y5I4 1007 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 MYH15Q9Y2K3 1946 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 DDAH1O94760 285 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 TSPY3P0CV98 308 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 TSPY8P0CW00 308 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 CALM1P0DP23 149 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 CALM2P0DP24 149 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 CALM3P0DP25 149 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 DGKHQ86XP1 1220 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 TRIM22Q8IYM9 498 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 ZNF287Q9HBT7 754 aa23.52■■□□□ 1.36
RIPPLY3-201ENST00000329553 ECM29Q5VYK3 1845 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 CEBPZQ03701 1054 aaKnown RBP23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 USP28Q96RU2 1077 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 PSMD1Q99460 953 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 FTOQ9C0B1 505 aaKnown RBP eCLIP23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 MTFR1LQ9H019 292 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 TCP11L1Q9NUJ3 509 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 KIF28PB7ZC32 967 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 KIF23Q02241 960 aaPredicted RBP23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 ANKS1AQ92625 1134 aa23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 NOL7Q9UMY1 257 aaKnown RBP23.51■■□□□ 1.35
RIPPLY3-201ENST00000329553 MSNP26038 577 aaKnown RBP23.5■■□□□ 1.35
RIPPLY3-201ENST00000329553 TGFB2P61812 414 aa23.5■■□□□ 1.35
RIPPLY3-201ENST00000329553 HDLBPQ00341 1268 aaKnown RBP23.5■■□□□ 1.35
RIPPLY3-201ENST00000329553 FUT2Q10981 343 aa23.5■■□□□ 1.35
RIPPLY3-201ENST00000329553 WASF1Q92558 559 aa23.5■■□□□ 1.35
RIPPLY3-201ENST00000329553 ATL3Q6DD88 541 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 ZNF396Q96N95 335 aaPredicted RBP23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 TSPY26PQ9H489 355 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 RBM28Q9NW13 759 aaKnown RBP23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 PLEKHA8P1O95397 391 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 DEXIO95424 95 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 POLD1P28340 1107 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 ZNF277Q9NRM2 450 aaPredicted RBP23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 RCOR1Q9UKL0 485 aa23.49■■□□□ 1.35
RIPPLY3-201ENST00000329553 TRIM29Q14134 588 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms