RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CTGFP29279 349 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 MTMR2Q13614 643 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 TTC6Q86TZ1 520 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 RNF39Q9H2S5 420 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 DCP1AQ9NPI6 582 aaPredicted RBP19.7■□□□□ 0.74
LSM1-201ENST00000311351 MCM9Q9NXL9 1143 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 AGTPBP1Q9UPW5 1226 aa19.7■□□□□ 0.74
LSM1-201ENST00000311351 POLR3DP05423 398 aaPredicted RBP19.69■□□□□ 0.74
LSM1-201ENST00000311351 CYP2D6P10635 497 aa19.69■□□□□ 0.74
LSM1-201ENST00000311351 PROCA1Q8NCQ7 364 aaPredicted RBP19.69■□□□□ 0.74
LSM1-201ENST00000311351 TBC1D2Q9BYX2 928 aa19.69■□□□□ 0.74
LSM1-201ENST00000311351 AS3MTQ9HBK9 375 aa19.69■□□□□ 0.74
LSM1-201ENST00000311351 SLC45A1Q9Y2W3 748 aa19.69■□□□□ 0.74
LSM1-201ENST00000311351 CENPFP49454 3210 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 GH2P01242 217 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 BCRP11274 1271 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 KIF22Q14807 665 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 UBE3CQ15386 1083 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 TATDN1Q6P1N9 297 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 WDR18Q9BV38 432 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 PTCH2Q9Y6C5 1203 aa19.68■□□□□ 0.74
LSM1-201ENST00000311351 SHMT1P34896 483 aa19.67■□□□□ 0.74
LSM1-201ENST00000311351 SH3D19Q5HYK7 790 aa19.67■□□□□ 0.74
LSM1-201ENST00000311351 KBTBD3Q8NAB2 608 aa19.67■□□□□ 0.74
LSM1-201ENST00000311351 PI4K2BQ8TCG2 481 aa19.67■□□□□ 0.74
LSM1-201ENST00000311351 TRIM47Q96LD4 638 aa19.67■□□□□ 0.74
LSM1-201ENST00000311351 PUS7LQ9H0K6 701 aaKnown RBP19.67■□□□□ 0.74
LSM1-201ENST00000311351 PSMC4P43686 418 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 RGS19P49795 217 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 GABPAQ06546 454 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 HDAC1Q13547 482 aaPredicted RBP19.66■□□□□ 0.74
LSM1-201ENST00000311351 ARHGEF6Q15052 776 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 ZSCAN25Q6NSZ9 544 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 SLC44A5Q8NCS7 719 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 SMCR8Q8TEV9 937 aaPredicted RBP19.66■□□□□ 0.74
LSM1-201ENST00000311351 GINM1Q9NU53 330 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 TTC41PQ6P2S7 1318 aa19.66■□□□□ 0.74
LSM1-201ENST00000311351 SMIM22K7EJ46 135 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 MX1P20591 662 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 BACE1P56817 501 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 CERKLQ49MI3 558 aaPredicted RBP19.65■□□□□ 0.74
LSM1-201ENST00000311351 ANKRD45Q5TZF3 282 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 EXOC6Q8TAG9 804 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 SALL3Q9BXA9 1300 aa19.65■□□□□ 0.74
LSM1-201ENST00000311351 KIAA0100Q14667 2235 aaKnown RBP19.65■□□□□ 0.74
LSM1-201ENST00000311351 RBBP6Q7Z6E9 1792 aaKnown RBP19.65■□□□□ 0.74
LSM1-201ENST00000311351 CYP2D7A0A087X1C5 515 aa19.64■□□□□ 0.73
LSM1-201ENST00000311351 ABCB5Q2M3G0 1257 aa19.64■□□□□ 0.73
LSM1-201ENST00000311351 DYNLL2Q96FJ2 89 aa19.64■□□□□ 0.73
LSM1-201ENST00000311351 PNMA3Q9UL41 463 aa19.64■□□□□ 0.73
LSM1-201ENST00000311351 SLC4A4Q9Y6R1 1079 aa19.64■□□□□ 0.73
LSM1-201ENST00000311351 USP17L10C9JJH3 530 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 ERC2O15083 957 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 FMNL1O95466 1100 aaPredicted RBP19.63■□□□□ 0.73
LSM1-201ENST00000311351 OSBPP22059 807 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 MLLT1Q03111 559 aaPredicted RBP19.63■□□□□ 0.73
LSM1-201ENST00000311351 RAB3GAP1Q15042 981 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 ZYXQ15942 572 aaKnown RBP19.63■□□□□ 0.73
LSM1-201ENST00000311351 ANKRD13CQ8N6S4 541 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 OSBP2Q969R2 916 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 GCC1Q96CN9 775 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 ASCC2Q9H1I8 757 aaPredicted RBP19.63■□□□□ 0.73
LSM1-201ENST00000311351 ATP8A2Q9NTI2 1148 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 TMOD4Q9NZQ9 345 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 DOCK3Q8IZD9 2030 aa19.63■□□□□ 0.73
LSM1-201ENST00000311351 RNF113AO15541 343 aaKnown RBP19.62■□□□□ 0.73
LSM1-201ENST00000311351 GLRX3O76003 335 aaKnown RBP19.62■□□□□ 0.73
LSM1-201ENST00000311351 GUCY1A2P33402 732 aa19.62■□□□□ 0.73
LSM1-201ENST00000311351 APPBP2Q92624 585 aa19.62■□□□□ 0.73
LSM1-201ENST00000311351 ARMC5Q96C12 935 aa19.62■□□□□ 0.73
LSM1-201ENST00000311351 FEZ1Q99689 392 aa19.62■□□□□ 0.73
LSM1-201ENST00000311351 ZBTB47Q9UFB7 747 aaPredicted RBP19.62■□□□□ 0.73
LSM1-201ENST00000311351 SUPT16HQ9Y5B9 1047 aaKnown RBP19.62■□□□□ 0.73
LSM1-201ENST00000311351 TNRC18O15417 2968 aaPredicted RBP19.61■□□□□ 0.73
LSM1-201ENST00000311351 C19orf81C9J6K1 198 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 USP17L12C9JPN9 530 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 USP17L21D6R901 530 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 M0R2C6 588 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 GNRH1P01148 92 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 PABPC4Q13310 644 aaKnown RBP eCLIP19.61■□□□□ 0.732e-7■□□□□ 10.4
LSM1-201ENST00000311351 SEPT2Q15019 361 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 SLC9C1Q4G0N8 1177 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 ACER1Q8TDN7 264 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 SH3TC2Q8TF17 1288 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 STRBPQ96SI9 672 aaKnown RBP19.61■□□□□ 0.73
LSM1-201ENST00000311351 EMILIN3Q9NT22 766 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 SRRDQ9UH36 339 aa19.61■□□□□ 0.73
LSM1-201ENST00000311351 MYPNQ86TC9 1320 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 MPHOSPH10O00566 681 aaKnown RBP19.6■□□□□ 0.73
LSM1-201ENST00000311351 HOXD11P31277 338 aaPredicted RBP19.6■□□□□ 0.73
LSM1-201ENST00000311351 FCGRTP55899 365 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 IRX3P78415 501 aaPredicted RBP19.6■□□□□ 0.73
LSM1-201ENST00000311351 AAMPQ13685 434 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 C12orf60Q5U649 245 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 ZNF333Q96JL9 665 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 FSD1Q9BTV5 496 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 CABP5Q9NP86 173 aa19.6■□□□□ 0.73
LSM1-201ENST00000311351 GPAA1O43292 621 aa19.59■□□□□ 0.73
LSM1-201ENST00000311351 ZFYP08048 801 aaPredicted RBP19.59■□□□□ 0.73
LSM1-201ENST00000311351 PRKCZQ05513 592 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms