RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 COL6A3P12111 3177 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 HLA-DOAP06340 250 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 TRIM27P14373 513 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 HERVK_113P62684 666 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 CERS3Q8IU89 383 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 CCAR1Q8IX12 1150 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 C7orf61Q8IZ16 206 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 TGFBRAP1Q8WUH2 860 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 C11orf49Q9H6J7 331 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 OGDHLQ9ULD0 1010 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 FLT1P17948 1338 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 PLXNB2O15031 1838 aa18.11■□□□□ 0.49
CCDC88B-201ENST00000301897 SIPA1L1O43166 1804 aa18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 PNMA6EA0A0J9YXQ4 647 aa18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 MAP3K21Q5TCX8 1036 aa18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 SLC17A8Q8NDX2 589 aa18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 TRIB2Q92519 343 aa18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 ZNF512BQ96KM6 892 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 P2RX7Q99572 595 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-201ENST00000301897 CDK5RAP2Q96SN8 1893 aa18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 DDX60LQ5H9U9 1706 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 PRKAR2AP13861 404 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 ZKSCAN1P17029 563 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 CYP2B6P20813 491 aa18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 OS9Q13438 667 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 MAPKAPK5Q8IW41 473 aa18.09■□□□□ 0.49
CCDC88B-201ENST00000301897 SOX1O00570 391 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 RGS2P41220 211 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 ERVK-9P63128 1117 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 ERVK-24P63145 666 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 TRIM32Q13049 653 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 TNNI3KQ59H18 835 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 TMED8Q6PL24 325 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L2Q6R6M4 530 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 DNAJC18Q9H819 358 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 SNRKQ9NRH2 765 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 ZBTB21Q9ULJ3 1066 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 FPGT-TNNI3KV9GXZ4 949 aa18.08■□□□□ 0.48
CCDC88B-201ENST00000301897 MNX1P50219 401 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 PLEKHH3Q7Z736 793 aa18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 FRAT1Q92837 279 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 LRCH3Q96II8 777 aa18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 CWC22Q9HCG8 908 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 TXNRD2Q9NNW7 524 aa18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 PALD1Q9ULE6 856 aa18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 ZMYND8Q9ULU4 1186 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-201ENST00000301897 GLRX3O76003 335 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 CYP2E1P05181 493 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 CCNA1P78396 465 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 POLA2Q14181 598 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 LRIT3Q3SXY7 679 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 SSH3Q8TE77 659 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 USP6NLQ92738 828 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 APBA2Q99767 749 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 DBNDD2Q9BQY9 259 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 RBPJLQ9UBG7 517 aa18.06■□□□□ 0.48
CCDC88B-201ENST00000301897 GDF11O95390 407 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 USP14P54578 494 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 CACNB2Q08289 660 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 MORN1Q5T089 497 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 GPR142Q7Z601 462 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 TDHQ8IZJ6 230 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 RABGAP1Q9Y3P9 1069 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 MYH1P12882 1939 aa18.05■□□□□ 0.48
CCDC88B-201ENST00000301897 MYO5AQ9Y4I1 1855 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 CCER2I3L3R5 266 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 CYP7A1P22680 504 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 MAGEA10P43363 369 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 JAG1P78504 1218 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 ATP8B2P98198 1209 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 ADGRA1Q86SQ6 560 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 CLUAP1Q96AJ1 413 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 C12orf42Q96LP6 360 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 PAGR1Q9BTK6 254 aa18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 SAP30BPQ9UHR5 308 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-201ENST00000301897 PFASO15067 1338 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L15C9J2P7 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L13C9JLJ4 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L11C9JVI0 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L18D6R9N7 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L22D6RA61 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L17D6RBQ6 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L19D6RCP7 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L20D6RJB6 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 DLL1O00548 723 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 SURF6O75683 361 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 COL6A1P12109 1028 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 ZAP70P43403 619 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 USP17L24Q0WX57 530 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 ZKSCAN2Q63HK3 967 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 DEFB123Q8N688 67 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 FEZ1Q99689 392 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 EHD4Q9H223 541 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 PORCNQ9H237 461 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 EMILIN3Q9NT22 766 aa18.03■□□□□ 0.48
CCDC88B-201ENST00000301897 BCAR3O75815 825 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 GH2P01242 217 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 SYN1P17600 705 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 USP5P45974 858 aa18.02■□□□□ 0.48
CCDC88B-201ENST00000301897 MAP2K5Q13163 448 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms