RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SCAF8Q9UPN6 1271 aaKnown RBP19.22■□□□□ 0.67
USP4-201ENST00000265560 ORC4O43929 436 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 KIF28PB7ZC32 967 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 EIF6P56537 245 aaKnown RBP19.21■□□□□ 0.67
USP4-201ENST00000265560 KRT85P78386 507 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 RCSD1Q6JBY9 416 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 KCNJ14Q9UNX9 436 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 BCS1LQ9Y276 419 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 PLCG2P16885 1265 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 FBXO18Q8NFZ0 1043 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 MTFR1LQ9H019 292 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 PIM2Q9P1W9 311 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 MYH1P12882 1939 aa19.21■□□□□ 0.67
USP4-201ENST00000265560 RASA1P20936 1047 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 CPLX2Q6PUV4 134 aaKnown RBP19.2■□□□□ 0.66
USP4-201ENST00000265560 CATIPQ7Z7H3 387 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 UPF1Q92900 1129 aaKnown RBP eCLIP19.2■□□□□ 0.66
USP4-201ENST00000265560 KIF3AQ9Y496 699 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 QSER1Q2KHR3 1735 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 ZBTB22O15209 634 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 SSRP1Q08945 709 aaKnown RBP19.2■□□□□ 0.66
USP4-201ENST00000265560 TROAPQ12815 778 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 CCDC125Q86Z20 511 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 TDRD3Q9H7E2 651 aaKnown RBP19.2■□□□□ 0.66
USP4-201ENST00000265560 TMTC2Q8N394 836 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 SPATA32Q96LK8 384 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 CPVLQ9H3G5 476 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 NAV1Q8NEY1 1877 aa19.2■□□□□ 0.66
USP4-201ENST00000265560 SHROOM1Q2M3G4 852 aaPredicted RBP19.19■□□□□ 0.66
USP4-201ENST00000265560 ZSCAN23Q3MJ62 389 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 SNED1Q8TER0 1413 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 PSMD14O00487 310 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 VEGFAP15692 232 aaPredicted RBP19.19■□□□□ 0.66
USP4-201ENST00000265560 KRT40Q6A162 431 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 ZSCAN29Q8IWY8 852 aaPredicted RBP19.19■□□□□ 0.66
USP4-201ENST00000265560 PRMT6Q96LA8 375 aaPredicted RBP19.19■□□□□ 0.66
USP4-201ENST00000265560 USP28Q96RU2 1077 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 COL4A5P29400 1685 aa19.19■□□□□ 0.66
USP4-201ENST00000265560 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.18■□□□□ 0.66
USP4-201ENST00000265560 SYCE3A1L190 88 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 NBPF11Q86T75 865 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 V9GY48 417 aaPredicted RBP19.18■□□□□ 0.66
USP4-201ENST00000265560 PTMSP20962 102 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 CRACR2BQ8N4Y2 399 aaPredicted RBP19.18■□□□□ 0.66
USP4-201ENST00000265560 LAMB1P07942 1786 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 CDKL5O76039 1030 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 GOLGA8HP0CJ92 632 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 RTKN2Q8IZC4 609 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 STAG2Q8N3U4 1231 aa19.18■□□□□ 0.66
USP4-201ENST00000265560 LEO1Q8WVC0 666 aaPredicted RBP19.18■□□□□ 0.66
USP4-201ENST00000265560 CLRN2A0PK11 232 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 DALRD3Q5D0E6 543 aaKnown RBP19.17■□□□□ 0.66
USP4-201ENST00000265560 SHTN1A0MZ66 631 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 IFNAR1P17181 557 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 CC2D2BQ6DHV5 1058 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 HHIPL2Q6UWX4 724 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 NLGN2Q8NFZ4 835 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 SUGT1Q9Y2Z0 365 aa19.17■□□□□ 0.66
USP4-201ENST00000265560 TMED8Q6PL24 325 aaPredicted RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 KAT14Q9H8E8 782 aa19.16■□□□□ 0.66
USP4-201ENST00000265560 CFAP100Q494V2 611 aa19.16■□□□□ 0.66
USP4-201ENST00000265560 C16orf86Q6ZW13 317 aa19.16■□□□□ 0.66
USP4-201ENST00000265560 PNMA1Q8ND90 353 aa19.16■□□□□ 0.66
USP4-201ENST00000265560 DDTLA6NHG4 134 aaPredicted RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 FMNL1O95466 1100 aaPredicted RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 PCP11498 1178 aaKnown RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 GNL2Q13823 731 aaKnown RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 SUPT20HQ8NEM7 779 aa19.16■□□□□ 0.66
USP4-201ENST00000265560 ZSCAN16Q9H4T2 348 aaPredicted RBP19.16■□□□□ 0.66
USP4-201ENST00000265560 TRIM22Q8IYM9 498 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 SRBD1Q8N5C6 995 aaKnown RBP19.15■□□□□ 0.66
USP4-201ENST00000265560 CEP95Q96GE4 821 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 ZDHHC15Q96MV8 337 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 OSBPL5Q9H0X9 879 aaPredicted RBP19.15■□□□□ 0.66
USP4-201ENST00000265560 VPS54Q9P1Q0 977 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 AKR1B1P15121 316 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 ATP2B2Q01814 1243 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 SHISA4Q96DD7 197 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 PGBD1Q96JS3 809 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 CLIC4Q9Y696 253 aa19.15■□□□□ 0.66
USP4-201ENST00000265560 GOLGA6L3A6NEY3 463 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 MPHOSPH10O00566 681 aaKnown RBP19.14■□□□□ 0.66
USP4-201ENST00000265560 LIG1P18858 919 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 ATP2B1P20020 1258 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 UBE2HP62256 183 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 KIF23Q02241 960 aaPredicted RBP19.14■□□□□ 0.66
USP4-201ENST00000265560 TMEM47Q9BQJ4 181 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 FAM198AQ9UFP1 575 aa19.14■□□□□ 0.66
USP4-201ENST00000265560 GOLGA6L4A6NEF3 574 aa19.14■□□□□ 0.65
USP4-201ENST00000265560 BTBD18B2RXH4 712 aa19.14■□□□□ 0.65
USP4-201ENST00000265560 TMEM87AQ8NBN3 555 aa19.14■□□□□ 0.65
USP4-201ENST00000265560 CTCFLQ8NI51 663 aaPredicted RBP19.14■□□□□ 0.65
USP4-201ENST00000265560 TCP10L2B9ZVM9 353 aa19.14■□□□□ 0.65
USP4-201ENST00000265560 OXER1Q8TDS5 423 aa19.14■□□□□ 0.65
USP4-201ENST00000265560 DDX60LQ5H9U9 1706 aaKnown RBP19.13■□□□□ 0.65
USP4-201ENST00000265560 CCDC196A0A1B0GTZ2 297 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 NR5A1Q13285 461 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 TRIM29Q14134 588 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 CAMK4Q16566 473 aa19.13■□□□□ 0.65
USP4-201ENST00000265560 SERPINB13Q9UIV8 391 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms