RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 ARHGEF16Q5VV41 709 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 IGSF22Q8N9C0 903 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 MRPL44Q9H9J2 332 aaKnown RBP9.72□□□□□ -0.85
PTCD3-201ENST00000254630 KCNK9Q9NPC2 374 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 PTPRTO14522 1441 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 CFAP157Q5JU67 520 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 C2CD5Q86YS7 1000 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 UBL4BQ8N7F7 174 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 PHKBQ93100 1093 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 TTC37Q6PGP7 1564 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 CRCPO75575 148 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 NELFBQ8WX92 580 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 UIMC1Q96RL1 719 aa9.72□□□□□ -0.85
PTCD3-201ENST00000254630 KDM3AQ9Y4C1 1321 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 E7EWF7 191 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 PRPF6O94906 941 aaKnown RBP9.71□□□□□ -0.85
PTCD3-201ENST00000254630 ATP2B4P23634 1241 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 MCM6Q14566 821 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 RASA3Q14644 834 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 FBF1Q8TES7 1133 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 NUP58Q9BVL2 599 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 TEKT1Q969V4 418 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 FAM204AQ9H8W3 233 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 H7C1D1 291 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 ATP5DP30049 168 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 PPP2R5BQ15173 497 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 UAP1Q16222 522 aaPredicted RBP9.71□□□□□ -0.85
PTCD3-201ENST00000254630 CSGALNACT2Q8N6G5 542 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 SEC62Q99442 399 aaKnown RBP9.71□□□□□ -0.85
PTCD3-201ENST00000254630 LRWD1Q9UFC0 647 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 ANAPC4Q9UJX5 808 aa9.71□□□□□ -0.85
PTCD3-201ENST00000254630 PSMC4P43686 418 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 PPP2R3AQ06190 1150 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 CALCOCO2Q13137 446 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 NLRX1Q86UT6 975 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 CFBP00751 764 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 GTF2IP78347 998 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 PPP1R21Q6ZMI0 780 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 DYMQ7RTS9 669 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 SPATA24Q86W54 205 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 DIS3L2Q8IYB7 885 aaKnown RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 LEO1Q8WVC0 666 aaPredicted RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 ZSCAN10Q96SZ4 725 aaPredicted RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 TTF2Q9UNY4 1162 aaKnown RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 TARBP1Q13395 1621 aaKnown RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 SGSM2O43147 1006 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 IVLP07476 585 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 ERCC5P28715 1186 aaPredicted RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 ARID4AP29374 1257 aaPredicted RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 ALDH3A1P30838 453 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 GADL1Q6ZQY3 521 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 CPXCR1Q8N123 301 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 SMC6Q96SB8 1091 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 KCNJ14Q9UNX9 436 aa9.71□□□□□ -0.86
PTCD3-201ENST00000254630 UTP11Q9Y3A2 253 aaKnown RBP9.71□□□□□ -0.86
PTCD3-201ENST00000254630 NPHP4O75161 1426 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 PLEKHG1Q9ULL1 1385 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 TFAP4Q01664 338 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 TBC1D8BQ0IIM8 1120 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 POSTNQ15063 836 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 CCDC6Q16204 474 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 OTUD6AQ7L8S5 288 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 GPR161Q8N6U8 529 aaKnown RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 FLAD1Q8NFF5 587 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 MAPK8IP1Q9UQF2 711 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ATP7BP35670 1465 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 TCP10L2B9ZVM9 353 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 PPEF1O14829 653 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 LPXNO60711 386 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 SEC24BO95487 1268 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 NAPGQ99747 312 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 VPS18Q9P253 973 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 CSADQ9Y600 493 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 KRT19P08727 400 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ZBTB16Q05516 673 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ABCA8O94911 1581 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 CETN3O15182 167 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 SH3BP5O60239 455 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 KMT5BQ4FZB7 885 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 SPOUT1Q5T280 376 aaKnown RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 FAM102BQ5T8I3 360 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 MIER3Q7Z3K6 550 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ATRIPQ8WXE1 791 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 TRERF1Q96PN7 1200 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ZKSCAN5Q9Y2L8 839 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 MED23Q9ULK4 1368 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 CCDC121Q6ZUS5 278 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ZBTB38Q8NAP3 1195 aaPredicted RBP9.7□□□□□ -0.86
PTCD3-201ENST00000254630 CCT6BQ92526 530 aa9.7□□□□□ -0.86
PTCD3-201ENST00000254630 ATP5JP18859 108 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 GABPAQ06546 454 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 NOX5Q96PH1 765 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 ZMYND15Q9H091 742 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 SLC5A4Q9NY91 659 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 ZMYM6O95789 1325 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 NBPF11Q86T75 865 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 TRIM7Q9C029 511 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.69□□□□□ -0.868e-6■■■□□ 18.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms