RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 XBP1P17861 261 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 NT5DC1Q5TFE4 455 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 KANK3Q6NY19 840 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 BARGINQ6ZT62 677 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 RNF26Q9BY78 433 aaPredicted RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 GNL3LQ9NVN8 582 aaKnown RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 ABCF2Q9UG63 623 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 SRPRBQ9Y5M8 271 aaKnown RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 LOC102724428A0A0B4J2F2 783 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 MAGEB6P1A0A0J9YX57 407 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 SPDYE4A6NLX3 237 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 TOP1P11387 765 aaKnown RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 SIK1P57059 783 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 AKAP17AQ02040 695 aaKnown RBP18.82■□□□□ 0.6
HOXD3-201ENST00000249440 NR5A1Q13285 461 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 SDR42E1Q8WUS8 393 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 PCDHB6Q9Y5E3 794 aa18.82■□□□□ 0.6
HOXD3-201ENST00000249440 TNKSO95271 1327 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 FOXN1O15353 648 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 BMP6P22004 513 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 MLKLQ8NB16 471 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 FBXO41Q8TF61 875 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 RAI14Q9P0K7 980 aa18.81■□□□□ 0.6
HOXD3-201ENST00000249440 THRAP3Q9Y2W1 955 aaKnown RBP18.81■□□□□ 0.6
HOXD3-201ENST00000249440 MYH14Q7Z406 1995 aaKnown RBP18.81■□□□□ 0.6
HOXD3-201ENST00000249440 GRIN1Q05586 938 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 SEC23AQ15436 765 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 ADGRA1Q86SQ6 560 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 TRIML1Q8N9V2 468 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 SMARCE1Q969G3 411 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 TMX1Q9H3N1 280 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 L2HGDHQ9H9P8 463 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 OGFRQ9NZT2 677 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 MAN1B1Q9UKM7 699 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 ZNF804BA4D1E1 1349 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 SYT10Q6XYQ8 523 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 CABP5Q9NP86 173 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 SERTAD1Q9UHV2 236 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 IQSEC3Q9UPP2 1182 aaPredicted RBP18.8■□□□□ 0.6
HOXD3-201ENST00000249440 ZNF652Q9Y2D9 606 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 RREB1Q92766 1687 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 MYH2Q9UKX2 1941 aa18.8■□□□□ 0.6
HOXD3-201ENST00000249440 SARSP49591 514 aaKnown RBP18.79■□□□□ 0.6
HOXD3-201ENST00000249440 PDE4BQ07343 736 aa18.79■□□□□ 0.6
HOXD3-201ENST00000249440 HOMER1Q86YM7 354 aa18.79■□□□□ 0.6
HOXD3-201ENST00000249440 CCDC34Q96HJ3 373 aa18.79■□□□□ 0.6
HOXD3-201ENST00000249440 ZNF397Q8NF99 534 aaPredicted RBP18.79■□□□□ 0.6
HOXD3-201ENST00000249440 OXER1Q8TDS5 423 aa18.79■□□□□ 0.6
HOXD3-201ENST00000249440 RGS17Q9UGC6 210 aaPredicted RBP18.79■□□□□ 0.6
HOXD3-201ENST00000249440 ENOX1Q8TC92 643 aaKnown RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ZSCAN10Q96SZ4 725 aaPredicted RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 PRDM10Q9NQV6 1147 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 MORC2Q9Y6X9 1032 aaPredicted RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 THSD7AQ9UPZ6 1657 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ZSCAN20P17040 1043 aaPredicted RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ATP2B1P20020 1258 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 CDK11BP21127 795 aaKnown RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ETF1P62495 437 aaKnown RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ITPK1Q13572 414 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 UBE4AQ14139 1066 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 MORC3Q14149 939 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 CAVIN4Q5BKX8 364 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 FCHSD1Q86WN1 690 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 ANKRD18AQ8IVF6 992 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 RIOK1Q9BRS2 568 aaKnown RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 BCL11BQ9C0K0 894 aaPredicted RBP18.78■□□□□ 0.6
HOXD3-201ENST00000249440 NFE2L3Q9Y4A8 694 aa18.78■□□□□ 0.6
HOXD3-201ENST00000249440 TMEM232C9JQI7 657 aa18.77■□□□□ 0.6
HOXD3-201ENST00000249440 GYG1P46976 350 aa18.77■□□□□ 0.6
HOXD3-201ENST00000249440 CATIPQ7Z7H3 387 aa18.77■□□□□ 0.6
HOXD3-201ENST00000249440 ENAHQ8N8S7 591 aaPredicted RBP18.77■□□□□ 0.6
HOXD3-201ENST00000249440 CSRNP2Q9H175 543 aa18.77■□□□□ 0.6
HOXD3-201ENST00000249440 PRR29P0C7W0 189 aa18.77■□□□□ 0.59
HOXD3-201ENST00000249440 PCP11498 1178 aaKnown RBP18.77■□□□□ 0.59
HOXD3-201ENST00000249440 IFIT1BQ5T764 474 aaKnown RBP18.77■□□□□ 0.59
HOXD3-201ENST00000249440 IQCA1Q86XH1 822 aa18.77■□□□□ 0.59
HOXD3-201ENST00000249440 PDILTQ8N807 584 aa18.77■□□□□ 0.59
HOXD3-201ENST00000249440 BRIP1Q9BX63 1249 aa18.77■□□□□ 0.59
HOXD3-201ENST00000249440 RBM28Q9NW13 759 aaKnown RBP18.77■□□□□ 0.59
HOXD3-201ENST00000249440 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.77■□□□□ 0.59
HOXD3-201ENST00000249440 V9GYY5 206 aaPredicted RBP18.77■□□□□ 0.59
HOXD3-201ENST00000249440 BAZ2AQ9UIF9 1905 aaKnown RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 CACNA1SQ13698 1873 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 TRIM75PA6NK02 468 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 ARHGAP6O43182 974 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 ZSCAN12O43309 604 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 PRPF3O43395 683 aaKnown RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 ACTN4O43707 911 aaKnown RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 KRT2P35908 639 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 CCDC93Q567U6 631 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 CLEC4GQ6UXB4 293 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 SPATA20Q8TB22 786 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 PHF20Q9BVI0 1012 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 DDX41Q9UJV9 622 aaKnown RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 TRPC5Q9UL62 973 aaPredicted RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 PHLPP2Q6ZVD8 1323 aa18.76■□□□□ 0.59
HOXD3-201ENST00000249440 CICQ96RK0 1608 aaPredicted RBP18.76■□□□□ 0.59
HOXD3-201ENST00000249440 CALM1P0DP23 149 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 CALM2P0DP24 149 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 CALM3P0DP25 149 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms