RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 CCDC6Q16204 474 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 IFT81Q8WYA0 676 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ATP8A2Q9NTI2 1148 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 TCP10L2B9ZVM9 353 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 USP17L12C9JPN9 530 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 USP17L21D6R901 530 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 PSMC4P43686 418 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 GABPB2Q8TAK5 448 aaPredicted RBP21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ATRIPQ8WXE1 791 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 MAPK8IP1Q9UQF2 711 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 NDUFB9Q9Y6M9 179 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 PNMA6EA0A0J9YXQ4 647 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 GAS7O60861 476 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ZNF772Q68DY9 489 aaPredicted RBP21.12■□□□□ 0.97
SMPD3-201ENST00000219334 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.12■□□□□ 0.97
SMPD3-201ENST00000219334 TLDC2A0PJX2 215 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ALDH3A1P30838 453 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ASIC2Q16515 512 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 DOK7Q18PE1 504 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 C8orf34Q49A92 452 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 CCDC125Q86Z20 511 aa21.12■□□□□ 0.97
SMPD3-201ENST00000219334 GPR161Q8N6U8 529 aaKnown RBP21.12■□□□□ 0.97
SMPD3-201ENST00000219334 ATP5JP18859 108 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 ARHGEF16Q5VV41 709 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 GADL1Q6ZQY3 521 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 CCDC26Q8TAB7 109 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 PHKBQ93100 1093 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 PNMA2Q9UL42 364 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 GIGYF1O75420 1035 aaPredicted RBP21.11■□□□□ 0.97
SMPD3-201ENST00000219334 GCNT3O95395 438 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 ALAS1P13196 640 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 DYMQ7RTS9 669 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 MRPL44Q9H9J2 332 aaKnown RBP21.11■□□□□ 0.97
SMPD3-201ENST00000219334 PRPF6O94906 941 aaKnown RBP21.11■□□□□ 0.97
SMPD3-201ENST00000219334 PAK1Q13153 545 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 KRT40Q6A162 431 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 MCTP2Q6DN12 878 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 ZBTB38Q8NAP3 1195 aaPredicted RBP21.11■□□□□ 0.97
SMPD3-201ENST00000219334 CALCOCO1Q9P1Z2 691 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 SMIM23A6NLE4 172 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 MIER3Q7Z3K6 550 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 DSCC1Q9BVC3 393 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 ZMYND15Q9H091 742 aa21.11■□□□□ 0.97
SMPD3-201ENST00000219334 LOC102724428A0A0B4J2F2 783 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 TESPA1A2RU30 521 aaPredicted RBP21.1■□□□□ 0.97
SMPD3-201ENST00000219334 SIK1P57059 783 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 OTUD7BQ6GQQ9 843 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 IGSF22Q8N9C0 903 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 BAG1Q99933 345 aaPredicted RBP21.1■□□□□ 0.97
SMPD3-201ENST00000219334 TRIM35Q9UPQ4 493 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 NPC1L1Q9UHC9 1359 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 HSPA4P34932 840 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 GYG1P46976 350 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 CABP7Q86V35 215 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 NSMCE1Q8WV22 266 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 NT5C3AQ9H0P0 336 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 LTKP29376 864 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 CNGA1P29973 690 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 BIRC2Q13490 618 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 CFAP157Q5JU67 520 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 FAM196AQ6ZSG2 479 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 DEPTORQ8TB45 409 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 SMCO2A6NFE2 343 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 SCNN1DP51172 638 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 USPL1Q5W0Q7 1092 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 DCUN1D2Q6PH85 259 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 PPP1R21Q6ZMI0 780 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 TPH2Q8IWU9 490 aa21.1■□□□□ 0.97
SMPD3-201ENST00000219334 MRPL11Q9Y3B7 192 aaKnown RBP21.1■□□□□ 0.97
SMPD3-201ENST00000219334 P4HA1P13674 534 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 RXRBP28702 533 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 SMC1BQ8NDV3 1235 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 UIMC1Q96RL1 719 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 ERBB4Q15303 1308 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 PER1O15534 1290 aaPredicted RBP21.09■□□□□ 0.97
SMPD3-201ENST00000219334 ARHGEF6Q15052 776 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 CERKLQ49MI3 558 aaPredicted RBP21.09■□□□□ 0.97
SMPD3-201ENST00000219334 CEP128Q6ZU80 1094 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 IWS1Q96ST2 819 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 HAUS2Q9NVX0 235 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 TRPC6Q9Y210 931 aa21.09■□□□□ 0.97
SMPD3-201ENST00000219334 METTL13Q8N6R0 699 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 CCT6BQ92526 530 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 TBC1D7Q9P0N9 293 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 PCCAP05165 728 aaPredicted RBP21.08■□□□□ 0.97
SMPD3-201ENST00000219334 ANKS4BQ8N8V4 417 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 MLKLQ8NB16 471 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 CARD10Q9BWT7 1032 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 NR1I2O75469 434 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 RAD51AP2Q09MP3 1159 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 ANKRD35Q8N283 1001 aa21.08■□□□□ 0.97
SMPD3-201ENST00000219334 SYNRGQ9UMZ2 1314 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 ZNF365Q70YC5 407 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 UBL4BQ8N7F7 174 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 NUP58Q9BVL2 599 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 KCNK9Q9NPC2 374 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 BCRP11274 1271 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 KCNJ14Q9UNX9 436 aa21.08■□□□□ 0.96
SMPD3-201ENST00000219334 TTLL7Q6ZT98 887 aa21.07■□□□□ 0.96
SMPD3-201ENST00000219334 TICAM2Q86XR7 235 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms