RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IFT81Q8WYA0 676 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 NRBF2Q96F24 287 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 PANX2Q96RD6 677 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 NUTM2BA6NNL0 878 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 NUTM2EB1AL46 878 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CTNNA1P35221 906 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ERMNQ8TAM6 284 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF483Q8TF39 744 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 FOXP2O15409 715 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 RGS16O15492 202 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 HPDP32754 393 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 SAFB2Q14151 953 aaKnown RBP eCLIP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 OR8K1Q8NGG5 319 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 CPLX3Q8WVH0 158 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF653Q96CK0 615 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 HAUS8Q9BT25 410 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 KLC4Q9NSK0 619 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 COG7P83436 770 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ATP8B2P98198 1209 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 PPP1R2P3Q6NXS1 205 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ARHGEF18Q6ZSZ5 1173 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ZNF148Q9UQR1 794 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 NOC2LQ9Y3T9 749 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 USP16Q9Y5T5 823 aa5.19□□□□□ -1.58
SCN1A-220ENST00000641603 BZW2Q9Y6E2 419 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 TDRD9Q8NDG6 1382 aaKnown RBP5.19□□□□□ -1.58
SCN1A-220ENST00000641603 ATXN2Q99700 1313 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ESRRBO95718 433 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 NOP2P46087 812 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 GABPB2Q8TAK5 448 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 KIAA1468Q9P260 1216 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 NT5C2P49902 561 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PLCD1P51178 756 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ZC3H6P61129 1189 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC13Q8IYE1 715 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 DDX23Q9BUQ8 820 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ATP2C2O75185 946 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ZWINTO95229 277 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PDE6CP51160 858 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ARHGEF2Q92974 986 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 EHMT1Q9H9B1 1298 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PDP2Q9P2J9 529 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ABLIM1O14639 778 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 GFAPP14136 432 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MATR3P43243 847 aaKnown RBP eCLIP5.18□□□□□ -1.581e-10■■■■■ 37.8
SCN1A-220ENST00000641603 C10orf76Q5T2E6 689 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 BIN1O00499 593 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 STX2P32856 288 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CCT6AP40227 531 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 INAQ16352 499 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 DIS3Q9Y2L1 958 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ENO4A6NNW6 628 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MYL1P05976 194 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 SLC9C1Q4G0N8 1177 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ZGPATQ8N5A5 531 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 GGA2Q9UJY4 613 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ZBTB12Q9Y330 459 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MAP3K7O43318 606 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 SSBP05455 408 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 AK2P54819 239 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PARP9Q8IXQ6 854 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 RHPN1Q8TCX5 695 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ARHGAP5Q13017 1502 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PLXNC1O60486 1568 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 RASGRF2O14827 1237 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 NR1D1P20393 614 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CASP14P31944 242 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 KARSQ15046 597 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ATP2B3Q16720 1220 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CCDC80Q76M96 950 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ARHGEF25Q86VW2 580 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PARD6BQ9BYG5 372 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CCND1P24385 295 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 IL9RQ01113 521 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 CATSPER1Q8NEC5 780 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 EXOC6BQ9Y2D4 811 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 DNMBPQ6XZF7 1577 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 ERBB4Q15303 1308 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MYOM2P54296 1465 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 LOC102724159A0A0B4J2E5 919 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MGEA5O60502 916 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 HARSP12081 509 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 PWP2Q15269 919 aaKnown RBP5.18□□□□□ -1.58
SCN1A-220ENST00000641603 MFN1Q8IWA4 741 aa5.18□□□□□ -1.58
SCN1A-220ENST00000641603 NESP48681 1621 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 PRPF6O94906 941 aaKnown RBP5.17□□□□□ -1.58
SCN1A-220ENST00000641603 GNA14O95837 355 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 OSBPL3Q9H4L5 887 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 POLE3Q9NRF9 147 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 IRAK4Q9NWZ3 460 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KIAA0232Q92628 1395 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 SPATA31E1Q6ZUB1 1445 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 TMCC1O94876 653 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 CTNNA2P26232 953 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 STAT6P42226 847 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 DNM2P50570 870 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 KLHDC4Q8TBB5 520 aa5.17□□□□□ -1.58
SCN1A-220ENST00000641603 FGD4Q96M96 766 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms