RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FBRSQ9HAH7 460 aa7.87□□□□□ -1.15
CD44-239ENST00000639002 PRDM10Q9NQV6 1147 aa7.87□□□□□ -1.15
CD44-239ENST00000639002 PCDHB5Q9Y5E4 795 aa7.87□□□□□ -1.15
CD44-239ENST00000639002 CNTNAP4Q9C0A0 1308 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 EOMESO95936 686 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 PDIA4P13667 645 aaKnown RBP7.86□□□□□ -1.15
CD44-239ENST00000639002 MEI1Q5TIA1 1274 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 AGBL5Q8NDL9 886 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 ELMO3Q96BJ8 720 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 MISP3Q96FF7 219 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 TNKS2Q9H2K2 1166 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 VAV3Q9UKW4 847 aa7.86□□□□□ -1.15
CD44-239ENST00000639002 CEACAM5P06731 702 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 ITGB5P18084 799 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 PRKCQQ04759 706 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 SLBPQ14493 270 aaKnown RBP eCLIP7.85□□□□□ -1.15
CD44-239ENST00000639002 CCDC85BQ15834 202 aaPredicted RBP7.85□□□□□ -1.15
CD44-239ENST00000639002 IFI16Q16666 785 aaKnown RBP7.85□□□□□ -1.15
CD44-239ENST00000639002 KRTAP1-3Q8IUG1 177 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 STK11IPQ8N1F8 1099 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 PARP2Q9UGN5 583 aa7.85□□□□□ -1.15
CD44-239ENST00000639002 GFRA2O00451 464 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 CTSHP09668 335 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 RPS26P62854 115 aaKnown RBP7.84□□□□□ -1.15
CD44-239ENST00000639002 DAB2P98082 770 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 TAGLNQ01995 201 aaKnown RBP7.84□□□□□ -1.15
CD44-239ENST00000639002 NKG7Q16617 165 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 ARMCX6Q7L4S7 300 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 FBXO33Q7Z6M2 555 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 ZNF507Q8TCN5 953 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 WNT10AQ9GZT5 417 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 PICK1Q9NRD5 415 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 RNF114Q9Y508 228 aa7.84□□□□□ -1.15
CD44-239ENST00000639002 PRAMEF27A3QJZ7 478 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 IGF2BP3O00425 579 aaKnown RBP eCLIP7.83□□□□□ -1.16
CD44-239ENST00000639002 SLITRK5O94991 958 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 FUT4P22083 530 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 SEPT6Q14141 434 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 AOC3Q16853 763 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 NKPD1Q17RQ9 610 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 AGMOQ6ZNB7 445 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 CDC37L1Q7L3B6 337 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 HDXQ7Z353 690 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 GOLGA2P5Q9HBQ8 144 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 ADAMTS6Q9UKP5 1117 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 SNCAIPQ9Y6H5 919 aa7.83□□□□□ -1.16
CD44-239ENST00000639002 ITIH2P19823 946 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 LIG3P49916 1009 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 MAP3K11Q16584 847 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 ZNF792Q3KQV3 632 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 WIPI1Q5MNZ9 446 aaPredicted RBP7.82□□□□□ -1.16
CD44-239ENST00000639002 LCE3BQ5TA77 95 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 SPACA3Q8IXA5 215 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 KCT2Q8NC54 265 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 RIN3Q8TB24 985 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 FAM161BQ96MY7 647 aa7.82□□□□□ -1.16
CD44-239ENST00000639002 MBNL3Q9NUK0 354 aaKnown RBP7.82□□□□□ -1.16
CD44-239ENST00000639002 TMEM265A0A087WTH1 108 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 LRIG2O94898 1065 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 TFE3P19532 575 aaPredicted RBP7.81□□□□□ -1.16
CD44-239ENST00000639002 CAP2P40123 477 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 PLCL1Q15111 1095 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 HRASLS5Q96KN8 279 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 GTF2IRD1Q9UHL9 959 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 SNX11Q9Y5W9 270 aa7.81□□□□□ -1.16
CD44-239ENST00000639002 PAPLNO95428 1278 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 RNASE1P07998 156 aaKnown RBP7.8□□□□□ -1.16
CD44-239ENST00000639002 TXKP42681 527 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 FGD1P98174 961 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 ARHGAP27Q6ZUM4 889 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 TMC4Q7Z404 712 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 FOXQ1Q9C009 403 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 TLR6Q9Y2C9 796 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 USP31Q70CQ4 1352 aa7.8□□□□□ -1.16
CD44-239ENST00000639002 PRR33A8MZF0 331 aa7.79□□□□□ -1.16
CD44-239ENST00000639002 GRK4P32298 578 aa7.79□□□□□ -1.16
CD44-239ENST00000639002 ETF1P62495 437 aaKnown RBP7.78□□□□□ -1.16
CD44-239ENST00000639002 PSMD2Q13200 908 aa7.78□□□□□ -1.16
CD44-239ENST00000639002 TAF1CQ15572 869 aaPredicted RBP7.78□□□□□ -1.16
CD44-239ENST00000639002 HID1Q8IV36 788 aa7.78□□□□□ -1.16
CD44-239ENST00000639002 CARMIL2Q6F5E8 1435 aa7.78□□□□□ -1.16
CD44-239ENST00000639002 JUNBP17275 347 aaPredicted RBP7.77□□□□□ -1.17
CD44-239ENST00000639002 ST13P50502 369 aaKnown RBP7.77□□□□□ -1.17
CD44-239ENST00000639002 PHC3Q8NDX5 983 aa7.77□□□□□ -1.17
CD44-239ENST00000639002 NOC4LQ9BVI4 516 aaKnown RBP7.77□□□□□ -1.17
CD44-239ENST00000639002 PRDM5Q9NQX1 630 aaPredicted RBP7.77□□□□□ -1.17
CD44-239ENST00000639002 CST3P01034 146 aaPredicted RBP7.76□□□□□ -1.17
CD44-239ENST00000639002 PRAMEF13Q5VWM6 474 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 MFSD2AQ8NA29 543 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 LRRN4CLQ8ND94 238 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 MIPEPQ99797 713 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 PRDM7Q9NQW5 492 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 TJP2Q9UDY2 1190 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 MAPK8IP1Q9UQF2 711 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 TACC3Q9Y6A5 838 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 PITPNM2Q9BZ72 1349 aa7.76□□□□□ -1.17
CD44-239ENST00000639002 F6X3S4 739 aa7.75□□□□□ -1.17
CD44-239ENST00000639002 PI4K2BQ8TCG2 481 aa7.75□□□□□ -1.17
CD44-239ENST00000639002 JARID2Q92833 1246 aaPredicted RBP7.75□□□□□ -1.17
CD44-239ENST00000639002 ASIC4Q96FT7 647 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms