RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 SH2B2O14492 632 aaPredicted RBP21.42■■□□□ 1.02
CLN3-263ENST00000637871 DDNO94850 711 aaPredicted RBP21.42■■□□□ 1.02
CLN3-263ENST00000637871 CYP7A1P22680 504 aa21.42■■□□□ 1.02
CLN3-263ENST00000637871 SART3Q15020 963 aaKnown RBP21.42■■□□□ 1.02
CLN3-263ENST00000637871 CIAPIN1Q6FI81 312 aa21.42■■□□□ 1.02
CLN3-263ENST00000637871 USP17L3A6NCW0 530 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 USP17L4A6NCW7 530 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 MFSD6Q6ZSS7 791 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 CHST3Q7LGC8 479 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 USP17L1Q7RTZ2 530 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 TBC1D10CQ8IV04 446 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 NBPF3Q9H094 633 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 ANAPC4Q9UJX5 808 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 SLC4A4Q9Y6R1 1079 aa21.41■■□□□ 1.02
CLN3-263ENST00000637871 GRIK5Q16478 980 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 DACT2Q5SW24 774 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 CERS5Q8N5B7 392 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 ARMT1Q9H993 441 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 RCOR1Q9UKL0 485 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 HPS5Q9UPZ3 1129 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 MAGEB6P1A0A0J9YX57 407 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 TDO2P48775 406 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 PPP2R5BQ15173 497 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 SYNE3Q6ZMZ3 975 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 BRAPQ7Z569 592 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 ZNF526Q8TF50 670 aaPredicted RBP21.4■■□□□ 1.02
CLN3-263ENST00000637871 RAI14Q9P0K7 980 aa21.4■■□□□ 1.02
CLN3-263ENST00000637871 MYO5AQ9Y4I1 1855 aaKnown RBP21.39■■□□□ 1.02
CLN3-263ENST00000637871 SHTN1A0MZ66 631 aa21.39■■□□□ 1.01
CLN3-263ENST00000637871 SPTY2D1Q68D10 685 aaPredicted RBP21.39■■□□□ 1.01
CLN3-263ENST00000637871 IGDCC4Q8TDY8 1250 aa21.39■■□□□ 1.01
CLN3-263ENST00000637871 NCOA5Q9HCD5 579 aaKnown RBP21.39■■□□□ 1.01
CLN3-263ENST00000637871 EPB41L4AQ9HCS5 686 aaPredicted RBP21.39■■□□□ 1.01
CLN3-263ENST00000637871 ORC3Q9UBD5 711 aaPredicted RBP21.39■■□□□ 1.01
CLN3-263ENST00000637871 ADAMTSL1Q8N6G6 1762 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 FAM205AQ6ZU69 1335 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 MFSD14BQ5SR56 506 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 STRIP1Q5VSL9 837 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 PDLIM2Q96JY6 352 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 C8orf76Q96K31 380 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 NID2Q14112 1375 aa21.38■■□□□ 1.01
CLN3-263ENST00000637871 ZC3H4Q9UPT8 1303 aaKnown RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 B4E1Z4 1266 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 F8W031 263 aaPredicted RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 VIL1P09327 827 aaKnown RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 FDPSP14324 419 aaKnown RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 GMPSP49915 693 aaPredicted RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 METAP2P50579 478 aaKnown RBP eCLIP21.37■■□□□ 1.01
CLN3-263ENST00000637871 RSBN1LQ6PCB5 846 aaPredicted RBP21.37■■□□□ 1.01
CLN3-263ENST00000637871 CYB5R4Q7L1T6 521 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 LCORLQ8N3X6 602 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 FBXO18Q8NFZ0 1043 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 ABCF2Q9UG63 623 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 ERICH2A1L162 156 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 ZBTB43O43298 467 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 TNIP1Q15025 636 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 TMEM67Q5HYA8 995 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 APOA5Q6Q788 366 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 GPC2Q8N158 579 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 WASF1Q92558 559 aa21.37■■□□□ 1.01
CLN3-263ENST00000637871 CCDC196A0A1B0GTZ2 297 aa21.36■■□□□ 1.01
CLN3-263ENST00000637871 CCDC192P0DO97 292 aa21.36■■□□□ 1.01
CLN3-263ENST00000637871 KIAA0825Q8IV33 1275 aa21.36■■□□□ 1.01
CLN3-263ENST00000637871 NUP62CLQ9H1M0 184 aa21.36■■□□□ 1.01
CLN3-263ENST00000637871 TFIP11Q9UBB9 837 aaKnown RBP21.36■■□□□ 1.01
CLN3-263ENST00000637871 STK36Q9NRP7 1315 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 GLTPD2A6NH11 291 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 CCDC69A6NI79 296 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 IFIT3O14879 490 aaKnown RBP21.35■■□□□ 1.01
CLN3-263ENST00000637871 PRDX5P30044 214 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 ADD1P35611 737 aaKnown RBP21.35■■□□□ 1.01
CLN3-263ENST00000637871 NFXL1Q6ZNB6 911 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 LY9Q9HBG7 655 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 ZSWIM5Q9P217 1185 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 SLC12A7Q9Y666 1083 aa21.35■■□□□ 1.01
CLN3-263ENST00000637871 CTAGE5O15320 804 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 CAVIN2O95810 425 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 SCNN1DP51172 638 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 PPARAQ07869 468 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 MAP3K11Q16584 847 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 DPY19L2Q6NUT2 758 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 RIOK1Q9BRS2 568 aaKnown RBP21.34■■□□□ 1.01
CLN3-263ENST00000637871 GPHNQ9NQX3 736 aaPredicted RBP21.34■■□□□ 1.01
CLN3-263ENST00000637871 NEDD4P46934 1319 aa21.34■■□□□ 1.01
CLN3-263ENST00000637871 FAM173BQ6P4H8 233 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 CERS3Q8IU89 383 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 ESR2Q92731 530 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 GMLQ99445 158 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 FUCA2Q9BTY2 467 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 RTEL1Q9NZ71 1219 aa21.33■■□□□ 1.01
CLN3-263ENST00000637871 KDM4AO75164 1064 aa21.33■■□□□ 1
CLN3-263ENST00000637871 YEATS4O95619 227 aa21.33■■□□□ 1
CLN3-263ENST00000637871 RBM43Q6ZSC3 357 aaKnown RBP21.33■■□□□ 1
CLN3-263ENST00000637871 WDR66Q8TBY9 1149 aa21.33■■□□□ 1
CLN3-263ENST00000637871 WDR90Q96KV7 1748 aa21.32■■□□□ 1
CLN3-263ENST00000637871 WTAPQ15007 396 aa21.32■■□□□ 1
CLN3-263ENST00000637871 BICD2Q8TD16 824 aa21.32■■□□□ 1
CLN3-263ENST00000637871 CLSTN2Q9H4D0 955 aa21.32■■□□□ 1
CLN3-263ENST00000637871 ATP8A2Q9NTI2 1148 aa21.32■■□□□ 1
CLN3-263ENST00000637871 GOLGA8AA7E2F4 631 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms