RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZFPM1Q8IX07 1006 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 MIGA1Q8NAN2 632 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 TBC1D2Q9BYX2 928 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 BCL11AQ9H165 835 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 RNF113AO15541 343 aaKnown RBP22.02■■□□□ 1.12
CLN3-259ENST00000637551 IRX6P78412 446 aaPredicted RBP22.02■■□□□ 1.12
CLN3-259ENST00000637551 PRKG1Q13976 671 aa22.02■■□□□ 1.12
CLN3-259ENST00000637551 GIMAP6Q6P9H5 292 aa22.02■■□□□ 1.12
CLN3-259ENST00000637551 TTC6Q86TZ1 520 aa22.02■■□□□ 1.12
CLN3-259ENST00000637551 WNK4Q96J92 1243 aa22.02■■□□□ 1.12
CLN3-259ENST00000637551 PHF20L1A8MW92 1017 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 GNAT2P19087 354 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 USP5P45974 858 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 TM4SF4P48230 202 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 DYNLL1P63167 89 aaKnown RBP22.01■■□□□ 1.11
CLN3-259ENST00000637551 PPATQ06203 517 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 TSHZ3Q63HK5 1081 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 PLEKHM2Q8IWE5 1019 aa22.01■■□□□ 1.11
CLN3-259ENST00000637551 NEFLP07196 543 aa22■■□□□ 1.11
CLN3-259ENST00000637551 PRPF38BQ5VTL8 546 aaKnown RBP22■■□□□ 1.11
CLN3-259ENST00000637551 DDRGK1Q96HY6 314 aa22■■□□□ 1.11
CLN3-259ENST00000637551 CFHR5Q9BXR6 569 aa22■■□□□ 1.11
CLN3-259ENST00000637551 SNCAIPQ9Y6H5 919 aa22■■□□□ 1.11
CLN3-259ENST00000637551 TESPA1A2RU30 521 aaPredicted RBP21.99■■□□□ 1.11
CLN3-259ENST00000637551 ALDH1A1P00352 501 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 SOX10P56693 466 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 KIF23Q02241 960 aaPredicted RBP21.99■■□□□ 1.11
CLN3-259ENST00000637551 PPIL2Q13356 520 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 B4GALNT3Q6L9W6 998 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 CENPQQ7L2Z9 268 aaPredicted RBP21.99■■□□□ 1.11
CLN3-259ENST00000637551 MIGA2Q7L4E1 593 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 MAPKAPK5Q8IW41 473 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 SCYL3Q8IZE3 742 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 CLMNQ96JQ2 1002 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 ZIC5Q96T25 663 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 FSD1Q9BTV5 496 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 ZCCHC17Q9NP64 241 aaKnown RBP21.99■■□□□ 1.11
CLN3-259ENST00000637551 ATAD5Q96QE3 1844 aa21.99■■□□□ 1.11
CLN3-259ENST00000637551 MBD4O95243 580 aa21.98■■□□□ 1.11
CLN3-259ENST00000637551 GTF2A2P52657 109 aa21.98■■□□□ 1.11
CLN3-259ENST00000637551 LCORLQ8N3X6 602 aa21.98■■□□□ 1.11
CLN3-259ENST00000637551 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.98■■□□□ 1.11
CLN3-259ENST00000637551 DCP1AQ9NPI6 582 aaPredicted RBP21.98■■□□□ 1.11
CLN3-259ENST00000637551 NOM1Q5C9Z4 860 aaKnown RBP21.97■■□□□ 1.11
CLN3-259ENST00000637551 AMOTL1Q8IY63 956 aa21.97■■□□□ 1.11
CLN3-259ENST00000637551 OPTNQ96CV9 577 aa21.97■■□□□ 1.11
CLN3-259ENST00000637551 SERPINB13Q9UIV8 391 aa21.97■■□□□ 1.11
CLN3-259ENST00000637551 FZD1Q9UP38 647 aa21.97■■□□□ 1.11
CLN3-259ENST00000637551 ZMYM1Q5SVZ6 1142 aa21.96■■□□□ 1.11
CLN3-259ENST00000637551 STRBPQ96SI9 672 aaKnown RBP21.96■■□□□ 1.11
CLN3-259ENST00000637551 PUS7LQ9H0K6 701 aaKnown RBP21.96■■□□□ 1.11
CLN3-259ENST00000637551 ELP3Q9H9T3 547 aa21.96■■□□□ 1.11
CLN3-259ENST00000637551 PICK1Q9NRD5 415 aa21.96■■□□□ 1.11
CLN3-259ENST00000637551 KCNH4Q9UQ05 1017 aa21.96■■□□□ 1.11
CLN3-259ENST00000637551 PHIPQ8WWQ0 1821 aa21.96■■□□□ 1.11
CLN3-259ENST00000637551 HIP1O00291 1037 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 INPP5BP32019 993 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 OTUD7BQ6GQQ9 843 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 OSBP2Q969R2 916 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 TRIM34Q9BYJ4 488 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 ARMT1Q9H993 441 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 ARPP21Q9UBL0 812 aaPredicted RBP21.95■■□□□ 1.1
CLN3-259ENST00000637551 PALD1Q9ULE6 856 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 PTPRFP10586 1907 aa21.95■■□□□ 1.1
CLN3-259ENST00000637551 BAZ2AQ9UIF9 1905 aaKnown RBP21.95■■□□□ 1.1
CLN3-259ENST00000637551 MYH8P13535 1937 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 CXCL11O14625 94 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 ASNSP08243 561 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 CAP2P40123 477 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 SNAPC2Q13487 334 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 TATDN1Q6P1N9 297 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 CRACR2BQ8N4Y2 399 aaPredicted RBP21.94■■□□□ 1.1
CLN3-259ENST00000637551 ZKSCAN4Q969J2 545 aaPredicted RBP21.94■■□□□ 1.1
CLN3-259ENST00000637551 MS4A4AQ96JQ5 239 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 HELLSQ9NRZ9 838 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 SWAP70Q9UH65 585 aa21.94■■□□□ 1.1
CLN3-259ENST00000637551 GPAA1O43292 621 aa21.93■■□□□ 1.1
CLN3-259ENST00000637551 CETPP11597 493 aa21.93■■□□□ 1.1
CLN3-259ENST00000637551 GABPAQ06546 454 aa21.93■■□□□ 1.1
CLN3-259ENST00000637551 SBK1Q52WX2 424 aa21.93■■□□□ 1.1
CLN3-259ENST00000637551 MCM9Q9NXL9 1143 aa21.93■■□□□ 1.1
CLN3-259ENST00000637551 ROBO3Q96MS0 1386 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 PTPRAP18433 802 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 GJA5P36382 358 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 OTUD5Q96G74 571 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 DNAJC18Q9H819 358 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 SLC4A4Q9Y6R1 1079 aa21.92■■□□□ 1.1
CLN3-259ENST00000637551 POLR3DP05423 398 aaPredicted RBP21.91■■□□□ 1.1
CLN3-259ENST00000637551 MFAP1P55081 439 aaKnown RBP21.91■■□□□ 1.1
CLN3-259ENST00000637551 SDR42E1Q8WUS8 393 aa21.91■■□□□ 1.1
CLN3-259ENST00000637551 NACAP1Q9BZK3 213 aa21.91■■□□□ 1.1
CLN3-259ENST00000637551 ZMYM6O95789 1325 aa21.9■■□□□ 1.1
CLN3-259ENST00000637551 IRF6O14896 467 aa21.9■■□□□ 1.1
CLN3-259ENST00000637551 C12orf60Q5U649 245 aa21.9■■□□□ 1.1
CLN3-259ENST00000637551 IFNL1Q8IU54 200 aa21.9■■□□□ 1.1
CLN3-259ENST00000637551 SAP30BPQ9UHR5 308 aaKnown RBP21.9■■□□□ 1.1
CLN3-259ENST00000637551 GSG1L2A8MUP6 293 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 PATL2C9JE40 543 aaKnown RBP21.89■■□□□ 1.09
CLN3-259ENST00000637551 PDE4AP27815 886 aa21.89■■□□□ 1.09
CLN3-259ENST00000637551 TTC22Q5TAA0 569 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms