RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 SMARCA5O60264 1052 aaPredicted RBP16.76■□□□□ 0.27
PNKP-228ENST00000637325 PTPRAP18433 802 aa16.76■□□□□ 0.27
PNKP-228ENST00000637325 USP5P45974 858 aa16.76■□□□□ 0.27
PNKP-228ENST00000637325 SP3Q02447 781 aa16.76■□□□□ 0.27
PNKP-228ENST00000637325 BOLA2Q9H3K6 86 aa16.76■□□□□ 0.27
PNKP-228ENST00000637325 HERC5Q9UII4 1024 aaKnown RBP16.76■□□□□ 0.27
PNKP-228ENST00000637325 SIPA1L1O43166 1804 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 HLA-DOAP06340 250 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 SLC9C2Q5TAH2 1124 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 CRACR2BQ8N4Y2 399 aaPredicted RBP16.75■□□□□ 0.27
PNKP-228ENST00000637325 CD99L2Q8TCZ2 262 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 DCTPP1Q9H773 170 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 SAP30BPQ9UHR5 308 aaKnown RBP16.75■□□□□ 0.27
PNKP-228ENST00000637325 TRIM17Q9Y577 477 aa16.75■□□□□ 0.27
PNKP-228ENST00000637325 MAGEB6P1A0A0J9YX57 407 aa16.74■□□□□ 0.27
PNKP-228ENST00000637325 ATP5JP18859 108 aa16.74■□□□□ 0.27
PNKP-228ENST00000637325 FBXO46Q6PJ61 603 aaPredicted RBP16.74■□□□□ 0.27
PNKP-228ENST00000637325 ANKRD23Q86SG2 305 aa16.74■□□□□ 0.27
PNKP-228ENST00000637325 FOXP4Q8IVH2 680 aaPredicted RBP16.74■□□□□ 0.27
PNKP-228ENST00000637325 PAG1Q9NWQ8 432 aa16.74■□□□□ 0.27
PNKP-228ENST00000637325 PALD1Q9ULE6 856 aa16.74■□□□□ 0.27
PNKP-228ENST00000637325 NAV1Q8NEY1 1877 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 PDHXO00330 501 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 PDE6AP16499 860 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 ARHGEF6Q15052 776 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 GADL1Q6ZQY3 521 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 FASTKD5Q7L8L6 764 aaKnown RBP16.73■□□□□ 0.27
PNKP-228ENST00000637325 HPS5Q9UPZ3 1129 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 AFG3L2Q9Y4W6 797 aa16.73■□□□□ 0.27
PNKP-228ENST00000637325 MYH8P13535 1937 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 TLR2O60603 784 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 CAP2P40123 477 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 SLC4A8Q2Y0W8 1093 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 OTOP1Q7RTM1 612 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 EDC3Q96F86 508 aaKnown RBP16.72■□□□□ 0.27
PNKP-228ENST00000637325 GPATCH3Q96I76 525 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 CRBNQ96SW2 442 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 HAUS7Q99871 368 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.72■□□□□ 0.277e-8■■■■□ 23.9
PNKP-228ENST00000637325 EFCC1Q9HA90 598 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 PCDHB15Q9Y5E8 787 aa16.72■□□□□ 0.27
PNKP-228ENST00000637325 BAZ2AQ9UIF9 1905 aaKnown RBP16.72■□□□□ 0.27
PNKP-228ENST00000637325 ZNF532Q9HCE3 1301 aa16.71■□□□□ 0.27
PNKP-228ENST00000637325 A0A0G2JLL6 359 aaPredicted RBP16.71■□□□□ 0.27
PNKP-228ENST00000637325 TRIM75PA6NK02 468 aa16.71■□□□□ 0.27
PNKP-228ENST00000637325 KIF22Q14807 665 aa16.71■□□□□ 0.27
PNKP-228ENST00000637325 PRRT2Q7Z6L0 340 aaPredicted RBP16.71■□□□□ 0.27
PNKP-228ENST00000637325 CCDC84Q86UT8 332 aaPredicted RBP16.71■□□□□ 0.27
PNKP-228ENST00000637325 TBC1D2Q9BYX2 928 aa16.71■□□□□ 0.27
PNKP-228ENST00000637325 CRNKL1Q9BZJ0 848 aaKnown RBP16.71■□□□□ 0.27
PNKP-228ENST00000637325 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.71■□□□□ 0.27
PNKP-228ENST00000637325 MGAMO43451 1857 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 USP17L5A8MUK1 530 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 MOGSQ13724 837 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 TTC6Q86TZ1 520 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 PARK7Q99497 189 aaKnown RBP16.7■□□□□ 0.26
PNKP-228ENST00000637325 RIOK1Q9BRS2 568 aaKnown RBP16.7■□□□□ 0.26
PNKP-228ENST00000637325 AS3MTQ9HBK9 375 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 ECHDC1Q9NTX5 307 aa16.7■□□□□ 0.26
PNKP-228ENST00000637325 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
PNKP-228ENST00000637325 ASNSP08243 561 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 SPP2Q13103 211 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 RRP1BQ14684 758 aaKnown RBP16.69■□□□□ 0.26
PNKP-228ENST00000637325 ZSCAN25Q6NSZ9 544 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 GPAT2Q6NUI2 795 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 ZNF280CQ8ND82 737 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 CPA4Q9UI42 421 aa16.69■□□□□ 0.26
PNKP-228ENST00000637325 KIAA0100Q14667 2235 aaKnown RBP16.69■□□□□ 0.26
PNKP-228ENST00000637325 ZSWIM8A7E2V4 1837 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 TCRBV5S4A2TA0A5A2 114 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 POLR3DP05423 398 aaPredicted RBP16.68■□□□□ 0.26
PNKP-228ENST00000637325 ADD2P35612 726 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 METTL16Q86W50 562 aaKnown RBP16.68■□□□□ 0.26
PNKP-228ENST00000637325 SERPINB13Q9UIV8 391 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 PTPN22Q9Y2R2 807 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 DOCK3Q8IZD9 2030 aa16.68■□□□□ 0.26
PNKP-228ENST00000637325 ECM2O94769 699 aaPredicted RBP16.67■□□□□ 0.26
PNKP-228ENST00000637325 GDF11O95390 407 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 SOX10P56693 466 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 C17orf99Q6UX52 265 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 DNAJC18Q9H819 358 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 GINM1Q9NU53 330 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 MCM9Q9NXL9 1143 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 SLC45A1Q9Y2W3 748 aa16.67■□□□□ 0.26
PNKP-228ENST00000637325 LOC285556D6RIA3 1793 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 MBD4O95243 580 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 CYP2C8P10632 490 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 HMGCS2P54868 508 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 LACTBP83111 547 aaPredicted RBP16.66■□□□□ 0.26
PNKP-228ENST00000637325 UBE3CQ15386 1083 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 LCORLQ8N3X6 602 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 ARMT1Q9H993 441 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 AGTPBP1Q9UPW5 1226 aa16.66■□□□□ 0.26
PNKP-228ENST00000637325 PABPC4Q13310 644 aaKnown RBP eCLIP16.65■□□□□ 0.26
PNKP-228ENST00000637325 SLFNL1Q499Z3 407 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 TSHZ3Q63HK5 1081 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 PROCA1Q8NCQ7 364 aaPredicted RBP16.65■□□□□ 0.26
PNKP-228ENST00000637325 SMCR8Q8TEV9 937 aaPredicted RBP16.65■□□□□ 0.26
PNKP-228ENST00000637325 SDR42E1Q8WUS8 393 aa16.65■□□□□ 0.26
PNKP-228ENST00000637325 WDR18Q9BV38 432 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms