RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 BPIFA3Q9BQP9 254 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ATG3Q9NT62 314 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 FAM53CQ9NYF3 392 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 RTEL1Q9NZ71 1219 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ORC3Q9UBD5 711 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF652Q9Y2D9 606 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 FAM205AQ6ZU69 1335 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SPTLC2O15270 562 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 CIAO1O76071 339 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 GPS2Q13227 327 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 BMS1Q14692 1282 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 TNIP1Q15025 636 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 TTF1Q15361 905 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 FAM173BQ6P4H8 233 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 LMBR1LQ6UX01 489 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF589Q86UQ0 364 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 LRRC8AQ8IWT6 810 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ZCRB1Q8TBF4 217 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 DBNDD2Q9BQY9 259 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 DBNLQ9UJU6 430 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 EYA2O00167 538 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SERPINC1P01008 464 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 CHGBP05060 677 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 KCNJ6P48051 423 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 PSEN1P49768 467 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 CCT2P78371 535 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 APOBRQ0VD83 1088 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SART3Q15020 963 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 PKN1Q16512 942 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 RABL6Q3YEC7 729 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SLFNL1Q499Z3 407 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ZMYM1Q5SVZ6 1142 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 NBPF10Q6P3W6 841 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 KIF6Q6ZMV9 814 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 AGXT2Q9BYV1 514 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 USP16Q9Y5T5 823 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 WDR19Q8NEZ3 1342 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 DOT1LQ8TEK3 1739 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ZNF213O14771 459 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 FKTNO75072 461 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 PLA2G5P39877 138 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 VEGFBP49765 207 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 NLRP12P59046 1061 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 SCRN1Q12765 414 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 NFXL1Q6ZNB6 911 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC191Q8NCU4 936 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 PLCD4Q9BRC7 762 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 TLR7Q9NYK1 1049 aaKnown RBP4.58□□□□□ -1.68
SCN1A-214ENST00000637038 CEP131Q9UPN4 1083 aa4.58□□□□□ -1.68
SCN1A-214ENST00000637038 ABCC12Q96J65 1359 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 COL5A2P05997 1499 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CYP21A2P08686 494 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PHKG2P15735 406 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 XBP1P17861 261 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PIP4K2AP48426 406 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PTPN12Q05209 780 aaKnown RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 ERFEQ4G0M1 354 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TMC6Q7Z403 805 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TMC4Q7Z404 712 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 SLC51AQ86UW1 340 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TRIM22Q8IYM9 498 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 UBXN4Q92575 508 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PGBD1Q96JS3 809 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TIGD1Q96MW7 591 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 POLR3EQ9NVU0 708 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 KLF18A0A0U1RQI7 1052 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 ERICH2A1L162 156 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 E7EWF7 191 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PRC1O43663 620 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 ALDH1B1P30837 517 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 SYKP43405 635 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TUBB4BP68371 445 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 AKAP17AQ02040 695 aaKnown RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 HSP90AB3PQ58FF7 597 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 EPHA10Q5JZY3 1008 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 KANK3Q6NY19 840 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 FCHSD1Q86WN1 690 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CABLES1Q8TDN4 633 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 OSBPL5Q9H0X9 879 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 KIAA1468Q9P260 1216 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 IKBKBO14920 756 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TOP1P11387 765 aaKnown RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 UBXN2AP68543 259 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 FKBP4Q02790 459 aaKnown RBP eCLIP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 LRMPQ12912 555 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 SLC39A6Q13433 755 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC129Q6ZRS4 1044 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CCAR2Q8N163 923 aaKnown RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 NFATC2IPQ8NCF5 419 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 ANKRD20A12PQ8NF67 263 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CACTINQ8WUQ7 758 aaKnown RBP4.57□□□□□ -1.68
SCN1A-214ENST00000637038 USP28Q96RU2 1077 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 PRDM6Q9NQX0 595 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 STXBP5LQ9Y2K9 1186 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TLL2Q9Y6L7 1015 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 CARMIL3Q8ND23 1372 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 ATAD5Q96QE3 1844 aa4.57□□□□□ -1.68
SCN1A-214ENST00000637038 TMEM265A0A087WTH1 108 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC196A0A1B0GTZ2 297 aa4.56□□□□□ -1.68
SCN1A-214ENST00000637038 ATP5J2-PTCD1G3V325 749 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms