RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZSWIM5Q9P217 1185 aa12.4□□□□□ -0.42
CLN3-248ENST00000636355 ATF5Q9Y2D1 282 aaPredicted RBP12.4□□□□□ -0.42
CLN3-248ENST00000636355 STK36Q9NRP7 1315 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 CCDC69A6NI79 296 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 IFIT3O14879 490 aaKnown RBP12.39□□□□□ -0.43
CLN3-248ENST00000636355 DDAH1O94760 285 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 VIL1P09327 827 aaKnown RBP12.39□□□□□ -0.43
CLN3-248ENST00000636355 CALM1P0DP23 149 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 CALM2P0DP24 149 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 CALM3P0DP25 149 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 ZSCAN22P10073 491 aaPredicted RBP12.39□□□□□ -0.43
CLN3-248ENST00000636355 MCM4P33991 863 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 CRKP46108 304 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 WTAPQ15007 396 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 SYNE3Q6ZMZ3 975 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 C16orf86Q6ZW13 317 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 NECAB1Q8N987 351 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 NSUN7Q8NE18 718 aaKnown RBP12.39□□□□□ -0.43
CLN3-248ENST00000636355 AGBL3Q8NEM8 1001 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 FBXW7Q969H0 707 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 IDI2Q9BXS1 227 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 LRRC2Q9BYS8 371 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 EHD4Q9H223 541 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 ZNRF3Q9ULT6 936 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 ATRNL1Q5VV63 1379 aa12.39□□□□□ -0.43
CLN3-248ENST00000636355 TNKSO95271 1327 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 PTPDC1A2A3K4 754 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 YDJCA8MPS7 323 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 CPLX1O14810 134 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 ZBTB43O43298 467 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 SYT1P21579 422 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 METAP2P50579 478 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLN3-248ENST00000636355 SEC23AQ15436 765 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 PPP4R3BQ5MIZ7 849 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 RSBN1LQ6PCB5 846 aaPredicted RBP12.38□□□□□ -0.43
CLN3-248ENST00000636355 TTC6Q86TZ1 520 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 TGFBRAP1Q8WUH2 860 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 ZSCAN10Q96SZ4 725 aaPredicted RBP12.38□□□□□ -0.43
CLN3-248ENST00000636355 DHX36Q9H2U1 1008 aaKnown RBP12.38□□□□□ -0.43
CLN3-248ENST00000636355 TOMM22Q9NS69 142 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 TCP11L1Q9NUJ3 509 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 SWAP70Q9UH65 585 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 HPS5Q9UPZ3 1129 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 SLC12A7Q9Y666 1083 aa12.38□□□□□ -0.43
CLN3-248ENST00000636355 WDHD1O75717 1129 aaPredicted RBP12.37□□□□□ -0.43
CLN3-248ENST00000636355 RPS12P25398 132 aaKnown RBP12.37□□□□□ -0.43
CLN3-248ENST00000636355 APOBEC3HQ6NTF7 200 aaKnown RBP12.37□□□□□ -0.43
CLN3-248ENST00000636355 NFXL1Q6ZNB6 911 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 CHST3Q7LGC8 479 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 MTMR14Q8NCE2 650 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 GMLQ99445 158 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 MAP3K14Q99558 947 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 OSBPL5Q9H0X9 879 aaPredicted RBP12.37□□□□□ -0.43
CLN3-248ENST00000636355 ZNF219Q9P2Y4 722 aaPredicted RBP12.37□□□□□ -0.43
CLN3-248ENST00000636355 HDAC9Q9UKV0 1011 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 BRPF3Q9ULD4 1205 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 ZDHHC9Q9Y397 364 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 TACC3Q9Y6A5 838 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 TCHHQ07283 1943 aa12.37□□□□□ -0.43
CLN3-248ENST00000636355 SBF1O95248 1867 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 GOLGA8AA7E2F4 631 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 RANBP6O60518 1105 aaKnown RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 BAG4O95429 457 aaKnown RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 F13A1P00488 732 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 POLR3DP05423 398 aaPredicted RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 HLA-DOAP06340 250 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 USP17L8P0C7I0 530 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 STK3Q13188 491 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 PKP1Q13835 747 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 RRP12Q5JTH9 1297 aaKnown RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 FKBP1CQ5VVH2 108 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 CDC42EP5Q6NZY7 148 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 DGKHQ86XP1 1220 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 MAPKAPK5Q8IW41 473 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 ENAHQ8N8S7 591 aaPredicted RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 FAM184AQ8NB25 1140 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 JDP2Q8WYK2 163 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 ANKS1AQ92625 1134 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 LARP6Q9BRS8 491 aaKnown RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 ZNF277Q9NRM2 450 aaPredicted RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 RBM28Q9NW13 759 aaKnown RBP12.36□□□□□ -0.43
CLN3-248ENST00000636355 MTMR6Q9Y217 621 aa12.36□□□□□ -0.43
CLN3-248ENST00000636355 CYP2D7A0A087X1C5 515 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 TSPY2A6NKD2 308 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 NFKBIEO00221 500 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 ENTPD3O75355 529 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 CTDNEP1O95476 244 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 IFNAR1P17181 557 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 GABPAQ06546 454 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 TNIP1Q15025 636 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 CSPP1Q1MSJ5 1256 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 SKOR2Q2VWA4 1001 aaPredicted RBP12.35□□□□□ -0.43
CLN3-248ENST00000636355 IFIT1BQ5T764 474 aaKnown RBP12.35□□□□□ -0.43
CLN3-248ENST00000636355 LARP1BQ659C4 914 aaKnown RBP12.35□□□□□ -0.43
CLN3-248ENST00000636355 CATIPQ7Z7H3 387 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 MICU3Q86XE3 530 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 KIAA0825Q8IV33 1275 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 ZNF654Q8IZM8 581 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 OGFOD1Q8N543 542 aa12.35□□□□□ -0.43
CLN3-248ENST00000636355 WASF1Q92558 559 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms