RNA–Protein interactions for RNA: ENST00000635293.1

TP53-228, Transcript of tumor protein p53, human

TSL 5

Gene TP53, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TP53-228	ENST00000635293	C12orf60	Q5U649	245 aa		13.61	□□□□□ -0.23
TP53-228	ENST00000635293	MICU3	Q86XE3	530 aa		13.61	□□□□□ -0.23
TP53-228	ENST00000635293	C7orf43	Q8WVR3	580 aa		13.61	□□□□□ -0.23
TP53-228	ENST00000635293	TNKS	O95271	1327 aa		13.6	□□□□□ -0.23
TP53-228	ENST00000635293	REST	Q13127	1097 aa		13.6	□□□□□ -0.23
TP53-228	ENST00000635293	CHAMP1	Q96JM3	812 aa		13.6	□□□□□ -0.23
TP53-228	ENST00000635293	ORC3	Q9UBD5	711 aa	Predicted RBP	13.6	□□□□□ -0.23
TP53-228	ENST00000635293	CNPY2	Q9Y2B0	182 aa		13.6	□□□□□ -0.23
TP53-228	ENST00000635293	CCDC196	A0A1B0GTZ2	297 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	DTNB	O60941	627 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	FDPS	P14324	419 aa	Known RBP	13.59	□□□□□ -0.23
TP53-228	ENST00000635293	TEX11	Q8IYF3	940 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.59	□□□□□ -0.23
TP53-228	ENST00000635293	SENP2	Q9HC62	589 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	DAGLA	Q9Y4D2	1042 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	ELP1	O95163	1332 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	RHBDL3	P58872	404 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	DNM1	Q05193	864 aa	Known RBP	13.59	□□□□□ -0.23
TP53-228	ENST00000635293	USP48	Q86UV5	1035 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	ZNF654	Q8IZM8	581 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	CERS5	Q8N5B7	392 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	FBXW7	Q969H0	707 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	ZNF287	Q9HBT7	754 aa		13.59	□□□□□ -0.23
TP53-228	ENST00000635293	FLT1	P17948	1338 aa		13.58	□□□□□ -0.23
TP53-228	ENST00000635293	RANBP6	O60518	1105 aa	Known RBP	13.58	□□□□□ -0.24
TP53-228	ENST00000635293	DDAH1	O94760	285 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	USP17L8	P0C7I0	530 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	CALM1	P0DP23	149 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	CALM2	P0DP24	149 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	CALM3	P0DP25	149 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	CYP2D6	P10635	497 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	KIAA2012	Q0VF49	1180 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	RTN1	Q16799	776 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	DOK7	Q18PE1	504 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	CCDC178	Q5BJE1	867 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	STRIP1	Q5VSL9	837 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	ATL3	Q6DD88	541 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	HHIPL2	Q6UWX4	724 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	FERMT3	Q86UX7	667 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	TTLL6	Q8N841	843 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	ENAH	Q8N8S7	591 aa	Predicted RBP	13.58	□□□□□ -0.24
TP53-228	ENST00000635293	GPT2	Q8TD30	523 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	TGFBRAP1	Q8WUH2	860 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	SYAP1	Q96A49	352 aa	Predicted RBP	13.58	□□□□□ -0.24
TP53-228	ENST00000635293	C8orf76	Q96K31	380 aa		13.58	□□□□□ -0.24
TP53-228	ENST00000635293	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.58	□□□□□ -0.24
TP53-228	ENST00000635293	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.58	□□□□□ -0.24
TP53-228	ENST00000635293	FIBP	O43427	364 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	ECE2	O60344	883 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	IFNAR1	P17181	557 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	UBE2H	P62256	183 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	NTRK3	Q16288	839 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	CCDC93	Q567U6	631 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	RAB11FIP4	Q86YS3	637 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	STK11IP	Q8N1F8	1099 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	WASF1	Q92558	559 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	ZKSCAN3	Q9BRR0	538 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	TTF2	Q9UNY4	1162 aa	Known RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	SMIM22	K7EJ46	135 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	CDC27	P30260	824 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	IARS	P41252	1262 aa	Known RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	HDLBP	Q00341	1268 aa	Known RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	IFIT1B	Q5T764	474 aa	Known RBP	13.57	□□□□□ -0.24
TP53-228	ENST00000635293	MAPKAPK5	Q8IW41	473 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	RTKN2	Q8IZC4	609 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	TEKT1	Q969V4	418 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	MRI	Q9BWK5	157 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	GRPEL1	Q9HAV7	217 aa		13.57	□□□□□ -0.24
TP53-228	ENST00000635293	PRDM1	O75626	825 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	FMNL1	O95466	1100 aa	Predicted RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	POLR3D	P05423	398 aa	Predicted RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	ADD1	P35611	737 aa	Known RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	SOGA3	Q5TF21	947 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	CAVIN1	Q6NZI2	390 aa	Known RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	CATIP	Q7Z7H3	387 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	TRIM22	Q8IYM9	498 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	FBXO18	Q8NFZ0	1043 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	PSMD1	Q99460	953 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	MYL10	Q9BUA6	226 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	DBNDD1	Q9H9R9	158 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	GDPD2	Q9HCC8	539 aa		13.56	□□□□□ -0.24
TP53-228	ENST00000635293	RTN4	Q9NQC3	1192 aa	Known RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	RBM28	Q9NW13	759 aa	Known RBP	13.56	□□□□□ -0.24
TP53-228	ENST00000635293	TSPY2	A6NKD2	308 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	RXRA	P19793	462 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	SSRP1	Q08945	709 aa	Known RBP	13.55	□□□□□ -0.24
TP53-228	ENST00000635293	DACT2	Q5SW24	774 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	BRAP	Q7Z569	592 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	FAM43A	Q8N2R8	423 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	FANCB	Q8NB91	859 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	ZNF396	Q96N95	335 aa	Predicted RBP	13.55	□□□□□ -0.24
TP53-228	ENST00000635293	CFAP45	Q9UL16	551 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	FER1L6	Q2WGJ9	1857 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	USP17L3	A6NCW0	530 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	USP17L4	A6NCW7	530 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	ZNF445	P59923	1031 aa		13.55	□□□□□ -0.24
TP53-228	ENST00000635293	C16orf86	Q6ZW13	317 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms