RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	LCORL	Q8N3X6	602 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NSUN4	Q96CB9	384 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CFHR5	Q9BXR6	569 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CD209	Q9NNX6	404 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	SALL1	Q9NSC2	1324 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ALDH1A1	P00352	501 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MECOM	Q03112	1051 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CUL4A	Q13619	759 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NKX2-3	Q8TAU0	364 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	RIOK1	Q9BRS2	568 aa	Known RBP	11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ARMT1	Q9H993	441 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	LAMB1	P07942	1786 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	GSG1L2	A8MUP6	293 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	LARGE1	O95461	756 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	HSP90AA1	P07900	732 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	RPS6KB1	P23443	525 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	PSMA5	P28066	241 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CHAF1A	Q13111	956 aa	Predicted RBP	11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NOL8	Q76FK4	1167 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZNF804A	Q7Z570	1209 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZGPAT	Q8N5A5	531 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MIGA1	Q8NAN2	632 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	FBXW7	Q969H0	707 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TCEANC2	Q96MN5	208 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	LARP6	Q9BRS8	491 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	RAI14	Q9P0K7	980 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	HPS5	Q9UPZ3	1129 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CYP46A1	Q9Y6A2	500 aa		11.28	□□□□□ -0.6
PDLIM5-223	ENST00000627587		E7EWF7	191 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	GPR25	O00155	361 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	PRKAB2	O43741	272 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ATXN8OS	P0DMR3	200 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CYP7A1	P22680	504 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	SOX10	P56693	466 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ST3GAL1	Q11201	340 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TOB2	Q14106	344 aa	Predicted RBP	11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	KRT32	Q14532	448 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	LDLRAD1	Q5T700	205 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZMYM6	O95789	1325 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	FOCAD	Q5VW36	1801 aa		11.27	□□□□□ -0.6
PDLIM5-223	ENST00000627587	HAX1	O00165	279 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	FKTN	O75072	461 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	TBC1D8	O95759	1140 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	HAND2	P61296	217 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ALX1	Q15699	326 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	BLOC1S2	Q6QNY1	142 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MOB2	Q70IA6	237 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MTMR14	Q8NCE2	650 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ZBED3	Q96IU2	234 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NEK1	Q96PY6	1258 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PDRG1	Q9NUG6	133 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CTNNA3	Q9UI47	895 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PPP2R3B	Q9Y5P8	575 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	TACC3	Q9Y6A5	838 aa		11.27	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DDX60L	Q5H9U9	1706 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MANSC4	A6NHS7	340 aa	Predicted RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PATL2	C9JE40	543 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	FKBP1A	P62942	108 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DYNLL1	P63167	89 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PRPF38B	Q5VTL8	546 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PRAMEF18	Q5VWM3	479 aa		11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SLC10A4	Q96EP9	437 aa		11.26	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MYO1B	O43795	1136 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	PPP1R12B	O60237	982 aa	Predicted RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	GTF2I	P78347	998 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	EXOSC10	Q01780	885 aa	Known RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DLGAP5	Q15398	846 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SUPT20HL1	Q3ZLR7	823 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NAA16	Q6N069	864 aa	Predicted RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	TBC1D10C	Q8IV04	446 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	IFNL3	Q8IZI9	196 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	WDR66	Q8TBY9	1149 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MXD3	Q9BW11	206 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	TPCN1	Q9ULQ1	816 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	FAM205A	Q6ZU69	1335 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SMIM22	K7EJ46	135 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MAP3K11	Q16584	847 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	IMMT	Q16891	758 aa	Known RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SPRYD7	Q5W111	196 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	KIAA0825	Q8IV33	1275 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SDR42E1	Q8WUS8	393 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	AGXT2	Q9BYV1	514 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ANGEL1	Q9UNK9	670 aa	Known RBP	11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	LIMCH1	Q9UPQ0	1083 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	NAV1	Q8NEY1	1877 aa		11.25	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MAGEB6P1	A0A0J9YX57	407 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	IGSF3	O75054	1194 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	APP	P05067	770 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ZBTB48	P10074	688 aa	Predicted RBP	11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	ME3	Q16798	604 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	OTUD7B	Q6GQQ9	843 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	TMED8	Q6PL24	325 aa	Predicted RBP	11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	DEFB129	Q9H1M3	183 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	CHMP5	Q9NZZ3	219 aa		11.24	□□□□□ -0.61
PDLIM5-223	ENST00000627587	SLC4A4	Q9Y6R1	1079 aa		11.24	□□□□□ -0.61

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