RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.92□□□□□ -0.82
VCL-206ENST00000623461 IKBKBO14920 756 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 CHUKO15111 745 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 RPL13P26373 211 aaKnown RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 ADAMTS12P58397 1594 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 CCDC84Q86UT8 332 aaPredicted RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 CSGALNACT2Q8N6G5 542 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 LINS1Q8NG48 757 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 MAP3K21Q5TCX8 1036 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 LDHAL6AQ6ZMR3 332 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 BICD1Q96G01 975 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 PARD6BQ9BYG5 372 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 C6orf50Q9HD87 102 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 ME3Q16798 604 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 CCDC170Q8IYT3 715 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 TMEM87AQ8NBN3 555 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 CCDC197Q8NCU1 140 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 EPHB4P54760 987 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 TRPC3Q13507 836 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 RPUSD2Q8IZ73 545 aaKnown RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 CRNKL1Q9BZJ0 848 aaKnown RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 BICC1Q9H694 974 aaKnown RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 ZSWIM6Q9HCJ5 1215 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 CABP5Q9NP86 173 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 POGZQ7Z3K3 1410 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 HHATQ5VTY9 493 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 ANKRD13DQ6ZTN6 518 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 SV2BQ7L1I2 683 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 RASEFQ8IZ41 740 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 DUOX2Q9NRD8 1548 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 CEP104O60308 925 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 CLTAP09496 248 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 CMA1P23946 247 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 ATP1A2P50993 1020 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 TRIM68Q6AZZ1 485 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 MPRIPQ6WCQ1 1025 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 KLHL7Q8IXQ5 586 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 IFIH1Q9BYX4 1025 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 LRRC23Q53EV4 343 aaPredicted RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 CFAP157Q5JU67 520 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 ALS2CLQ60I27 953 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 CLEC17AQ6ZS10 378 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 WAPLQ7Z5K2 1190 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 DDX27Q96GQ7 796 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 THEGQ9P2T0 379 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 MCM7P33993 719 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 SLC4A4Q9Y6R1 1079 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 GPATCH8Q9UKJ3 1502 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 A0A1W2PQ27 194 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 A0A1W2PQ64 194 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 A0A1W2PQD8 194 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 EIF3CLB5ME19 914 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 EVI5O60447 810 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 IFT88Q13099 833 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 E2F4Q16254 413 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 HSP90AA5PQ58FG0 334 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 CHST3Q7LGC8 479 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 EIF3CQ99613 913 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 Q9H521 79 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 BABAM1Q9NWV8 329 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 TAB2Q9NYJ8 693 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 TROVE2P10155 538 aaKnown RBP eCLIP9.91□□□□□ -0.82
VCL-206ENST00000623461 CCDC65Q8IXS2 484 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 DDX23Q9BUQ8 820 aaKnown RBP9.91□□□□□ -0.82
VCL-206ENST00000623461 ZNF652Q9Y2D9 606 aa9.91□□□□□ -0.82
VCL-206ENST00000623461 DNMT1P26358 1616 aaKnown RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 ABCC4O15439 1325 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 VWA3AA6NCI4 1184 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 NUTM2BA6NNL0 878 aaPredicted RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 NUTM2EB1AL46 878 aaPredicted RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 ZBTB17Q13105 803 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 TTC6Q86TZ1 520 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 SHANK2Q9UPX8 1470 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 LDHCP07864 332 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 RAPGEF1Q13905 1077 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 MAIP1Q8WWC4 291 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 NAP1L4Q99733 375 aaKnown RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 CARD14Q9BXL6 1004 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 PDE4DQ08499 809 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 NELFBQ8WX92 580 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 TRAPPC8Q9Y2L5 1435 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 RPSAP08865 295 aaKnown RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 RASIP1Q5U651 963 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 PA2G4Q9UQ80 394 aaKnown RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 PFKFB1P16118 471 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 TPD52P55327 224 aaPredicted RBP9.9□□□□□ -0.82
VCL-206ENST00000623461 SARM1Q6SZW1 724 aa9.9□□□□□ -0.82
VCL-206ENST00000623461 SUN1O94901 812 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 STX2P32856 288 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 PPP2R5BQ15173 497 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 TOM1L2Q6ZVM7 507 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 GBP7Q8N8V2 638 aaPredicted RBP9.9□□□□□ -0.83
VCL-206ENST00000623461 DESI2Q9BSY9 194 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 ADAM21Q9UKJ8 722 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 SAMD9Q5K651 1589 aa9.9□□□□□ -0.83
VCL-206ENST00000623461 PFDN1O60925 122 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 SNRPA1P09661 255 aaKnown RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 HEATR3Q7Z4Q2 680 aa9.89□□□□□ -0.83
VCL-206ENST00000623461 APBB1IPQ7Z5R6 666 aaPredicted RBP9.89□□□□□ -0.83
VCL-206ENST00000623461 RGS22Q8NE09 1264 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms