RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RBSNQ9H1K0 784 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 ANO8Q9HCE9 1232 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-213ENST00000620219 DACT1Q9NYF0 836 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 HDAC9Q9UKV0 1011 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 CTDP1Q9Y5B0 961 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-213ENST00000620219 PDILTQ8N807 584 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 CCDC34Q96HJ3 373 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 CRYBG1Q9Y4K1 1723 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 CLRN2A0PK11 232 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 GOLGA8HP0CJ92 632 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 SRGNP10124 158 aa18.18■□□□□ 0.5
CPSF1-213ENST00000620219 CCAR1Q8IX12 1150 aaKnown RBP18.18■□□□□ 0.5
CPSF1-213ENST00000620219 SMIM22K7EJ46 135 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 SH2B2O14492 632 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-213ENST00000620219 TSGA10IPQ3SY00 556 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 CCDC183Q5T5S1 534 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 KRT40Q6A162 431 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 FANCBQ8NB91 859 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 TOGARAM1Q9Y4F4 1720 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 RTL9Q8NET4 1388 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 DNTTIP2Q5QJE6 756 aaKnown RBP18.17■□□□□ 0.5
CPSF1-213ENST00000620219 ZNF277Q9NRM2 450 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-213ENST00000620219 USP17L3A6NCW0 530 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 USP17L4A6NCW7 530 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 MSNP26038 577 aaKnown RBP18.17■□□□□ 0.5
CPSF1-213ENST00000620219 USP17L1Q7RTZ2 530 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 VPS54Q9P1Q0 977 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 ABCA3Q99758 1704 aa18.17■□□□□ 0.5
CPSF1-213ENST00000620219 TM4SF1P30408 202 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 CTR9Q6PD62 1173 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 NOL7Q9UMY1 257 aaKnown RBP18.16■□□□□ 0.5
CPSF1-213ENST00000620219 ITGB4P16144 1822 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 ADAMTS7Q9UKP4 1686 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 TCP10L2B9ZVM9 353 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 MAP3K11Q16584 847 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 ISM2Q6H9L7 571 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 NIM1KQ8IY84 436 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 GPCPD1Q9NPB8 672 aa18.16■□□□□ 0.5
CPSF1-213ENST00000620219 FAM196BA6NMK8 535 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 EXOSC10Q01780 885 aaKnown RBP18.15■□□□□ 0.5
CPSF1-213ENST00000620219 PDGFDQ9GZP0 370 aaPredicted RBP18.15■□□□□ 0.5
CPSF1-213ENST00000620219 KCNB2Q92953 911 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 MYO1BO43795 1136 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 ANTXR2P58335 489 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 LRSAM1Q6UWE0 723 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 TDRD7Q8NHU6 1098 aaKnown RBP18.15■□□□□ 0.5
CPSF1-213ENST00000620219 CCDC192P0DO97 292 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 CABP5Q9NP86 173 aa18.15■□□□□ 0.5
CPSF1-213ENST00000620219 BIN1O00499 593 aa18.14■□□□□ 0.5
CPSF1-213ENST00000620219 DIS3L2Q8IYB7 885 aaKnown RBP18.14■□□□□ 0.5
CPSF1-213ENST00000620219 TCRBV5S4A2TA0A5A2 114 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 ECE2O60344 883 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 GRIK5Q16478 980 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 ZMYM6O95789 1325 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 LRRC47Q8N1G4 583 aaKnown RBP18.14■□□□□ 0.49
CPSF1-213ENST00000620219 PNMA1Q8ND90 353 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 SUPT20HQ8NEM7 779 aa18.14■□□□□ 0.49
CPSF1-213ENST00000620219 ERCC4Q92889 916 aaPredicted RBP18.14■□□□□ 0.49
CPSF1-213ENST00000620219 CCDC194A0A1B0GVG4 234 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 LIG1P18858 919 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 CLIP2Q9UDT6 1046 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 DLGAP5Q15398 846 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 ZYXQ15942 572 aaKnown RBP18.13■□□□□ 0.49
CPSF1-213ENST00000620219 LEO1Q8WVC0 666 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-213ENST00000620219 USP25Q9UHP3 1055 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 PNPLA7Q6ZV29 1317 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 CALM1P0DP23 149 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 CALM2P0DP24 149 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 CALM3P0DP25 149 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 FBXO41Q8TF61 875 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 USP28Q96RU2 1077 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 LAMB4A4D0S4 1761 aa18.13■□□□□ 0.49
CPSF1-213ENST00000620219 STAG1Q8WVM7 1258 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 FEZ1Q99689 392 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 A0A1B0GVL5 298 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 CDC27P30260 824 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 CCDC93Q567U6 631 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 TICAM2Q86XR7 235 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 SPTLC2O15270 562 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 LETM1O95202 739 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-213ENST00000620219 ALX1Q15699 326 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 MROH7-TTC4A0A0A0MT08 1334 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 DEXIO95424 95 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 SPECC1Q5M775 1068 aa18.12■□□□□ 0.49
CPSF1-213ENST00000620219 BTBD18B2RXH4 712 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 SPC24Q8NBT2 197 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 LY9Q9HBG7 655 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 NAPAP54920 295 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 CPVLQ9H3G5 476 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 KCNQ5Q9NR82 932 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 DPEP1P16444 411 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 FBXO18Q8NFZ0 1043 aa18.11■□□□□ 0.49
CPSF1-213ENST00000620219 TDRD3Q9H7E2 651 aaKnown RBP18.11■□□□□ 0.49
CPSF1-213ENST00000620219 BAZ2BQ9UIF8 2168 aaKnown RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 PARP1P09874 1014 aaKnown RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 RIOK1Q9BRS2 568 aaKnown RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 FAM13BQ9NYF5 915 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 SCAF8Q9UPN6 1271 aaKnown RBP18.1■□□□□ 0.49
CPSF1-213ENST00000620219 FSD2A1L4K1 749 aa18.1■□□□□ 0.49
CPSF1-213ENST00000620219 ENAHQ8N8S7 591 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms