RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 AIDAQ96BJ3 306 aa16.27■□□□□ 0.19
LINC00540-202ENST00000616974 TSKSQ9UJT2 592 aa16.27■□□□□ 0.19
LINC00540-202ENST00000616974 CASP8AP2Q9UKL3 1982 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 MKI67P46013 3256 aaKnown RBP16.26■□□□□ 0.19
LINC00540-202ENST00000616974 SDSP20132 328 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 FKBP1BP68106 108 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 NMIQ13287 307 aaPredicted RBP16.26■□□□□ 0.19
LINC00540-202ENST00000616974 ZMYM1Q5SVZ6 1142 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 CENPQQ7L2Z9 268 aaPredicted RBP16.26■□□□□ 0.19
LINC00540-202ENST00000616974 EVI5LQ96CN4 794 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 DYNLL2Q96FJ2 89 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 SLC4A4Q9Y6R1 1079 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 LAMB1P07942 1786 aa16.26■□□□□ 0.19
LINC00540-202ENST00000616974 PLCG2P16885 1265 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 MCM9Q9NXL9 1143 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 GSG1L2A8MUP6 293 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 NPM3O75607 178 aaKnown RBP16.25■□□□□ 0.19
LINC00540-202ENST00000616974 IREB2P48200 963 aaKnown RBP16.25■□□□□ 0.19
LINC00540-202ENST00000616974 KIF23Q02241 960 aaPredicted RBP16.25■□□□□ 0.19
LINC00540-202ENST00000616974 DGKZQ13574 1117 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 JMYQ8N9B5 988 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 HHIPL1Q96JK4 782 aa16.25■□□□□ 0.19
LINC00540-202ENST00000616974 GDF11O95390 407 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 MAP3K9P80192 1104 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 MAP3K10Q02779 954 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 ANKRD13AQ8IZ07 590 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 OPTNQ96CV9 577 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 OTUD5Q96G74 571 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 CRNKL1Q9BZJ0 848 aaKnown RBP16.24■□□□□ 0.19
LINC00540-202ENST00000616974 ZNF112Q9UJU3 913 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 COL2A1P02458 1487 aaPredicted RBP16.24■□□□□ 0.19
LINC00540-202ENST00000616974 SLC10A4Q96EP9 437 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 ZNF341Q9BYN7 854 aa16.24■□□□□ 0.19
LINC00540-202ENST00000616974 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.24■□□□□ 0.19
LINC00540-202ENST00000616974 SPRYD7Q5W111 196 aa16.23■□□□□ 0.19
LINC00540-202ENST00000616974 WNK4Q96J92 1243 aa16.23■□□□□ 0.19
LINC00540-202ENST00000616974 USP17L12C9JPN9 530 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 USP17L21D6R901 530 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 IRF6O14896 467 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 ZSCAN25Q6NSZ9 544 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 CWC27Q6UX04 472 aaKnown RBP16.22■□□□□ 0.19
LINC00540-202ENST00000616974 CTR9Q6PD62 1173 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 INCENPQ9NQS7 918 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 PI4KBQ9UBF8 816 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 TACC3Q9Y6A5 838 aa16.22■□□□□ 0.19
LINC00540-202ENST00000616974 DCAF15Q66K64 600 aa16.21■□□□□ 0.19
LINC00540-202ENST00000616974 CLEC10AQ8IUN9 316 aa16.21■□□□□ 0.19
LINC00540-202ENST00000616974 NKX2-3Q8TAU0 364 aa16.21■□□□□ 0.19
LINC00540-202ENST00000616974 PTPN18Q99952 460 aa16.21■□□□□ 0.19
LINC00540-202ENST00000616974 ZFYP08048 801 aaPredicted RBP16.21■□□□□ 0.18
LINC00540-202ENST00000616974 SHMT1P34896 483 aa16.21■□□□□ 0.18
LINC00540-202ENST00000616974 R3HDMLQ9H3Y0 253 aa16.21■□□□□ 0.18
LINC00540-202ENST00000616974 POLR3DP05423 398 aaPredicted RBP16.2■□□□□ 0.18
LINC00540-202ENST00000616974 HSPA1AP0DMV8 641 aaKnown RBP16.2■□□□□ 0.18
LINC00540-202ENST00000616974 HSPA1BP0DMV9 641 aaKnown RBP16.2■□□□□ 0.18
LINC00540-202ENST00000616974 GABPAQ06546 454 aa16.2■□□□□ 0.18
LINC00540-202ENST00000616974 METTL16Q86W50 562 aaKnown RBP16.2■□□□□ 0.18
LINC00540-202ENST00000616974 MS4A4AQ96JQ5 239 aa16.2■□□□□ 0.18
LINC00540-202ENST00000616974 PPP4R2Q9NY27 417 aa16.2■□□□□ 0.18
LINC00540-202ENST00000616974 IGF2BP3O00425 579 aaKnown RBP eCLIP16.19■□□□□ 0.18
LINC00540-202ENST00000616974 FOXN1O15353 648 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 IGSF3O75054 1194 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 ECE1P42892 770 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 NOGQ13253 232 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 CCDC102AQ96A19 550 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 DHX36Q9H2U1 1008 aaKnown RBP16.19■□□□□ 0.18
LINC00540-202ENST00000616974 WBP1LQ9NX94 342 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 CSADQ9Y600 493 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 SPDYE5A6NIY4 337 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 TBC1D12O60347 775 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 PTPRAP18433 802 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 C12orf60Q5U649 245 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 IFNL3Q8IZI9 196 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 CRACR2BQ8N4Y2 399 aaPredicted RBP16.19■□□□□ 0.18
LINC00540-202ENST00000616974 SERPINB13Q9UIV8 391 aa16.19■□□□□ 0.18
LINC00540-202ENST00000616974 MINDY4BA8MYZ0 360 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 APPP05067 770 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 CAP2P40123 477 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 ATP8A2Q9NTI2 1148 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 ZSWIM8A7E2V4 1837 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 PRDM1O75626 825 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 TMED8Q6PL24 325 aaPredicted RBP16.18■□□□□ 0.18
LINC00540-202ENST00000616974 SCYL3Q8IZE3 742 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 BRI3BPQ8WY22 251 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 ZHX2Q9Y6X8 837 aa16.18■□□□□ 0.18
LINC00540-202ENST00000616974 GUCY1A2P33402 732 aa16.17■□□□□ 0.18
LINC00540-202ENST00000616974 MOGSQ13724 837 aa16.17■□□□□ 0.18
LINC00540-202ENST00000616974 TRIM75PA6NK02 468 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 TRPA1O75762 1119 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 GH2P01242 217 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 HLA-DOAP06340 250 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 HSPD1P10809 573 aaKnown RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 MAP2K2P36507 400 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 MCMDC2Q4G0Z9 681 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 NOL9Q5SY16 702 aaKnown RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 TATDN1Q6P1N9 297 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 ERO1BQ86YB8 467 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 HERC5Q9UII4 1024 aaKnown RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 GREB1LQ9C091 1923 aaPredicted RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 DOCK3Q8IZD9 2030 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms